Analysis of interatomic Contacts of Structural Units in PDB entry:
4WM8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4WM8 entry

There are 4 chains in PDB entry 4WM8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 1	THR 296
B	SER 10	THR 247
C	GLY 1	GLN 247
D	ILE 29	LEU 67

There are 22 helices in PDB entry 4WM8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	38	43	Right-handed alpha
Helix 3	AA3	A	54	57	Right-handed 310
Helix 4	AA4	A	58	64	Right-handed alpha
Helix 5	AA5	A	100	108	Right-handed alpha
Helix 6	AA6	A	160	165	Right-handed 310
Helix 7	AA7	A	212	216	Right-handed 310
Helix 8	AA8	B	35	37	Right-handed 310
Helix 9	AA9	B	56	60	Right-handed 310
Helix 10	AB1	B	83	87	Right-handed 310
Helix 11	AB2	B	89	98	Right-handed alpha
Helix 12	AB3	B	142	147	Right-handed alpha
Helix 13	AB4	B	148	152	Right-handed 310
Helix 14	AB5	B	157	161	Right-handed 310
Helix 15	AB6	B	169	173	Right-handed 310
Helix 16	AB7	C	42	46	Right-handed 310
Helix 17	AB8	C	62	68	Right-handed 310
Helix 18	AB9	C	97	104	Right-handed alpha
Helix 19	AC1	C	143	148	Right-handed alpha
Helix 20	AC2	C	242	247	Right-handed 310
Helix 21	AC3	D	34	38	Right-handed 310
Helix 22	AC4	D	49	54	Right-handed alpha

There are 12 sheets in PDB entry 4WM8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	D	46	47	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	27	first strand
Strand 2	C	162	167	anti-parallel
Strand 3	C	113	119	anti-parallel
Strand 4	C	209	218	anti-parallel
Strand 5	C	51	52	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	27	first strand
Strand 2	C	162	167	anti-parallel
Strand 3	C	113	119	anti-parallel
Strand 4	C	209	218	anti-parallel
Strand 5	C	69	72	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	76	first strand
Strand 2	A	233	251	anti-parallel
Strand 3	A	110	127	anti-parallel
Strand 4	A	193	194	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	184	first strand
Strand 2	A	110	127	anti-parallel
Strand 3	A	233	251	anti-parallel
Strand 4	C	39	40	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	94	first strand
Strand 2	A	218	224	anti-parallel
Strand 3	A	142	149	anti-parallel
Strand 4	A	169	174	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	18	first strand
Strand 2	B	21	25	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	185	190	parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	227	242	anti-parallel
Strand 5	B	64	65	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	185	190	parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	227	242	anti-parallel
Strand 5	B	69	70	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	78	82	anti-parallel
Strand 3	B	207	218	anti-parallel
Strand 4	B	119	128	anti-parallel
Strand 5	B	175	179	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	85	first strand
Strand 2	C	191	196	anti-parallel
Strand 3	C	128	134	anti-parallel
Strand 4	C	151	156	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	177	first strand
Strand 2	C	106	110	anti-parallel
Strand 3	C	223	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4WM8

Analysis of interatomic Contacts of Structural Units in PDB entry:
4WM8