Analysis of interatomic Contacts of Structural Units in PDB entry:
4WMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WMF entry

There are 3 chains in PDB entry 4WMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1MET 305
B
 SER 1VAL 303
C
 GLY 11GLN 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 4WMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 15Right-handed 310
Helix 2
AA2
A
41 44Right-handed 310
Helix 3
AA3
A
45 49Right-handed 310
Helix 4
AA4
A
53 61Right-handed alpha
Helix 5
AA5
A
62 64Right-handed 310
Helix 6
AA6
A
184 188Right-handed 310
Helix 7
AA7
A
203 217Right-handed alpha
Helix 8
AA8
A
229 240Right-handed alpha
Helix 9
AA9
A
248 259Right-handed alpha
Helix 10
AB1
A
261 275Right-handed alpha
Helix 11
AB2
A
292 302Right-handed alpha
Helix 12
AB3
B
10 15Right-handed alpha
Helix 13
AB4
B
41 44Right-handed 310
Helix 14
AB5
B
45 49Right-handed 310
Helix 15
AB6
B
53 60Right-handed alpha
Helix 16
AB7
B
62 64Right-handed 310
Helix 17
AB8
B
184 188Right-handed 310
Helix 18
AB9
B
203 217Right-handed alpha
Helix 19
AC1
B
229 239Right-handed alpha
Helix 20
AC2
B
248 259Right-handed alpha
Helix 21
AC3
B
261 275Right-handed alpha
Helix 22
AC4
B
292 301Right-handed alpha
Helix 23
AC5
C
13 15Right-handed 310
Helix 24
AC6
C
41 44Right-handed 310
Helix 25
AC7
C
53 60Right-handed alpha
Helix 26
AC8
C
62 64Right-handed 310
Helix 27
AC9
C
184 188Right-handed 310
Helix 28
AD1
C
203 218Right-handed alpha
Helix 29
AD2
C
229 239Right-handed alpha
Helix 30
AD3
C
248 259Right-handed alpha
Helix 31
AD4
C
261 273Right-handed alpha
Helix 32
AD5
C
292 302Right-handed alpha
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There are 9 sheets in PDB entry 4WMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
66 70anti-parallel
Strand 3
A
17 22anti-parallel
Strand 4
A
25 32anti-parallel
Strand 5
A
35 39anti-parallel
Strand 6
A
89 94anti-parallel
Strand 7
A
80 86anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 106first strand
Strand 2
A
159 171parallel
Strand 3
A
174 178anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 132first strand
Strand 2
A
114 121anti-parallel
Strand 3
A
151 156anti-parallel
Strand 4
A
159 171anti-parallel
Strand 5
C
304 305anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 78first strand
Strand 2
B
66 70anti-parallel
Strand 3
B
17 22anti-parallel
Strand 4
B
25 32anti-parallel
Strand 5
B
35 39anti-parallel
Strand 6
B
89 94anti-parallel
Strand 7
B
80 86anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 106first strand
Strand 2
B
159 171parallel
Strand 3
B
151 156anti-parallel
Strand 4
B
114 121anti-parallel
Strand 5
B
124 132anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 106first strand
Strand 2
B
159 171parallel
Strand 3
B
174 178anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 78first strand
Strand 2
C
66 70anti-parallel
Strand 3
C
17 22anti-parallel
Strand 4
C
25 32anti-parallel
Strand 5
C
35 39anti-parallel
Strand 6
C
89 94anti-parallel
Strand 7
C
80 86anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 106first strand
Strand 2
C
159 169parallel
Strand 3
C
151 156anti-parallel
Strand 4
C
114 121anti-parallel
Strand 5
C
124 132anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 106first strand
Strand 2
C
159 169parallel
Strand 3
C
174 178anti-parallel
Strand 4
C
139 140anti-parallel
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