Analysis of interatomic Contacts of Structural Units in PDB entry:
4WMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WMY entry

There are 2 chains in PDB entry 4WMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 31ARG 313
B
 TRP 29ARG 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4WMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 48Right-handed alpha
Helix 2
AA2
A
73 77Right-handed 310
Helix 3
AA3
A
115 119Right-handed 310
Helix 4
AA4
A
125 129Right-handed 310
Helix 5
AA5
A
137 142Right-handed alpha
Helix 6
AA6
A
157 159Right-handed 310
Helix 7
AA7
A
160 165Right-handed alpha
Helix 8
AA8
A
174 178Right-handed 310
Helix 9
AA9
A
182 190Right-handed alpha
Helix 10
AB1
A
215 222Right-handed alpha
Helix 11
AB2
A
226 229Right-handed 310
Helix 12
AB3
A
260 264Right-handed 310
Helix 13
AB4
A
300 305Right-handed alpha
Helix 14
AB5
B
40 48Right-handed alpha
Helix 15
AB6
B
73 77Right-handed 310
Helix 16
AB7
B
137 142Right-handed alpha
Helix 17
AB8
B
157 159Right-handed 310
Helix 18
AB9
B
160 165Right-handed alpha
Helix 19
AC1
B
174 178Right-handed 310
Helix 20
AC2
B
182 190Right-handed alpha
Helix 21
AC3
B
215 222Right-handed alpha
Helix 22
AC4
B
224 229Right-handed alpha
Helix 23
AC5
B
260 264Right-handed 310
Helix 24
AC6
B
300 305Right-handed alpha
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There are 6 sheets in PDB entry 4WMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 59first strand
Strand 2
A
65 71anti-parallel
Strand 3
A
79 85anti-parallel
Strand 4
A
134 135anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 59first strand
Strand 2
A
65 71anti-parallel
Strand 3
A
79 85anti-parallel
Strand 4
A
306 313anti-parallel
Strand 5
A
146 153anti-parallel
Strand 6
A
167 170anti-parallel
Strand 7
A
210 213anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
231 241anti-parallel
Strand 3
A
247 256anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 59first strand
Strand 2
B
65 71anti-parallel
Strand 3
B
79 85anti-parallel
Strand 4
B
134 135anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 59first strand
Strand 2
B
65 71anti-parallel
Strand 3
B
79 85anti-parallel
Strand 4
B
306 313anti-parallel
Strand 5
B
146 153anti-parallel
Strand 6
B
167 170anti-parallel
Strand 7
B
210 213anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 208first strand
Strand 2
B
231 241anti-parallel
Strand 3
B
247 256anti-parallel
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