Analysis of interatomic Contacts of Structural Units in PDB entry:
4WNZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WNZ entry

There are 2 chains in PDB entry 4WNZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2VAL 286
B
 LYS 2VAL 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4WNZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 56Right-handed alpha
Helix 2
AA2
A
60 68Right-handed alpha
Helix 3
AA3
A
106 120Right-handed alpha
Helix 4
AA4
A
163 177Right-handed alpha
Helix 5
AA5
A
177 185Right-handed alpha
Helix 6
AA6
A
192 202Right-handed alpha
Helix 7
AA7
A
247 260Right-handed alpha
Helix 8
AA8
B
41 56Right-handed alpha
Helix 9
AA9
B
60 68Right-handed alpha
Helix 10
AB1
B
106 120Right-handed alpha
Helix 11
AB2
B
163 177Right-handed alpha
Helix 12
AB3
B
177 185Right-handed alpha
Helix 13
AB4
B
192 202Right-handed alpha
Helix 14
AB5
B
247 260Right-handed alpha
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There are 4 sheets in PDB entry 4WNZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
235 242anti-parallel
Strand 3
A
88 95anti-parallel
Strand 4
A
101 105anti-parallel
Strand 5
A
188 190parallel
Strand 6
A
135 138anti-parallel
Strand 7
A
153 157parallel
Strand 8
A
147 150anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
235 242anti-parallel
Strand 3
A
3 10anti-parallel
Strand 4
A
278 284anti-parallel
Strand 5
A
265 267anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 84first strand
Strand 2
B
235 242anti-parallel
Strand 3
B
88 95anti-parallel
Strand 4
B
101 105anti-parallel
Strand 5
B
188 190parallel
Strand 6
B
135 138anti-parallel
Strand 7
B
153 157parallel
Strand 8
B
147 150anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 84first strand
Strand 2
B
235 242anti-parallel
Strand 3
B
3 10anti-parallel
Strand 4
B
278 285anti-parallel
Strand 5
B
264 267anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il