Analysis of interatomic Contacts of Structural Units in PDB entry:
4WP0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4WP0 entry

There are 8 chains in PDB entry 4WP0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 4	GLY 246
A	THR 248	LEU 425
B	GLN 4	GLY 246
B	THR 248	ASN 424
C	GLN 4	GLY 246
C	THR 248	LEU 422
D	GLN 4	GLY 246
D	THR 248	ASN 424

There are 83 helices in PDB entry 4WP0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	11	Right-handed 310
Helix 2	AA2	A	16	28	Right-handed alpha
Helix 3	AA3	A	43	55	Right-handed alpha
Helix 4	AA4	A	57	62	Right-handed 310
Helix 5	AA5	A	69	85	Right-handed alpha
Helix 6	AA6	A	98	112	Right-handed alpha
Helix 7	AA7	A	127	135	Right-handed alpha
Helix 8	AA8	A	158	160	Right-handed 310
Helix 9	AA9	A	163	171	Right-handed alpha
Helix 10	AB1	A	192	206	Right-handed alpha
Helix 11	AB2	A	228	232	Right-handed 310
Helix 12	AB3	A	245	249	Right-handed alpha
Helix 13	AB4	A	251	255	Right-handed 310
Helix 14	AB5	A	262	275	Right-handed alpha
Helix 15	AB6	A	281	298	Right-handed alpha
Helix 16	AB7	A	304	326	Right-handed alpha
Helix 17	AB8	A	344	351	Right-handed alpha
Helix 18	AB9	A	361	375	Right-handed alpha
Helix 19	AC1	A	382	385	Right-handed 310
Helix 20	AC2	A	387	392	Right-handed 310
Helix 21	AC3	A	404	423	Right-handed alpha
Helix 22	AC4	B	7	11	Right-handed 310
Helix 23	AC5	B	17	28	Right-handed alpha
Helix 24	AC6	B	43	55	Right-handed alpha
Helix 25	AC7	B	57	62	Right-handed 310
Helix 26	AC8	B	69	85	Right-handed alpha
Helix 27	AC9	B	98	112	Right-handed alpha
Helix 28	AD1	B	127	135	Right-handed alpha
Helix 29	AD2	B	158	160	Right-handed 310
Helix 30	AD3	B	163	171	Right-handed alpha
Helix 31	AD4	B	192	206	Right-handed alpha
Helix 32	AD5	B	228	232	Right-handed 310
Helix 33	AD6	B	245	249	Right-handed alpha
Helix 34	AD7	B	251	255	Right-handed 310
Helix 35	AD8	B	262	275	Right-handed alpha
Helix 36	AD9	B	281	298	Right-handed alpha
Helix 37	AE1	B	304	326	Right-handed alpha
Helix 38	AE2	B	344	351	Right-handed alpha
Helix 39	AE3	B	361	375	Right-handed alpha
Helix 40	AE4	B	382	385	Right-handed 310
Helix 41	AE5	B	387	392	Right-handed 310
Helix 42	AE6	B	404	424	Right-handed alpha
Helix 43	AE7	C	16	28	Right-handed alpha
Helix 44	AE8	C	43	55	Right-handed alpha
Helix 45	AE9	C	57	62	Right-handed 310
Helix 46	AF1	C	69	85	Right-handed alpha
Helix 47	AF2	C	98	112	Right-handed alpha
Helix 48	AF3	C	127	135	Right-handed alpha
Helix 49	AF4	C	158	160	Right-handed 310
Helix 50	AF5	C	163	171	Right-handed alpha
Helix 51	AF6	C	192	206	Right-handed alpha
Helix 52	AF7	C	228	232	Right-handed 310
Helix 53	AF8	C	245	250	Right-handed alpha
Helix 54	AF9	C	251	255	Right-handed 310
Helix 55	AG1	C	262	275	Right-handed alpha
Helix 56	AG2	C	281	298	Right-handed alpha
Helix 57	AG3	C	304	326	Right-handed alpha
Helix 58	AG4	C	344	351	Right-handed alpha
Helix 59	AG5	C	361	375	Right-handed alpha
Helix 60	AG6	C	382	385	Right-handed 310
Helix 61	AG7	C	387	392	Right-handed 310
Helix 62	AG8	C	404	421	Right-handed alpha
Helix 63	AG9	D	7	11	Right-handed 310
Helix 64	AH1	D	17	28	Right-handed alpha
Helix 65	AH2	D	43	55	Right-handed alpha
Helix 66	AH3	D	57	62	Right-handed 310
Helix 67	AH4	D	69	85	Right-handed alpha
Helix 68	AH5	D	98	112	Right-handed alpha
Helix 69	AH6	D	127	135	Right-handed alpha
Helix 70	AH7	D	158	160	Right-handed 310
Helix 71	AH8	D	163	171	Right-handed alpha
Helix 72	AH9	D	192	206	Right-handed alpha
Helix 73	AI1	D	228	232	Right-handed 310
Helix 74	AI2	D	245	249	Right-handed alpha
Helix 75	AI3	D	251	255	Right-handed 310
Helix 76	AI4	D	262	275	Right-handed alpha
Helix 77	AI5	D	281	298	Right-handed alpha
Helix 78	AI6	D	304	326	Right-handed alpha
Helix 79	AI7	D	344	351	Right-handed alpha
Helix 80	AI8	D	361	375	Right-handed alpha
Helix 81	AI9	D	382	385	Right-handed 310
Helix 82	AJ1	D	387	392	Right-handed 310
Helix 83	AJ2	D	404	423	Right-handed alpha

There are 12 sheets in PDB entry 4WP0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	376	377	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	97	first strand
Strand 2	A	257	260	anti-parallel
Strand 3	A	239	244	anti-parallel
Strand 4	A	209	213	parallel
Strand 5	A	175	181	parallel
Strand 6	A	117	122	parallel
Strand 7	A	138	143	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	156	first strand
Strand 2	A	330	333	parallel
Strand 3	A	339	343	anti-parallel
Strand 4	A	396	400	anti-parallel
Strand 5	A	379	380	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	32	first strand
Strand 2	B	376	377	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	97	first strand
Strand 2	B	257	260	anti-parallel
Strand 3	B	239	244	anti-parallel
Strand 4	B	209	213	parallel
Strand 5	B	175	181	parallel
Strand 6	B	117	122	parallel
Strand 7	B	138	143	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	156	first strand
Strand 2	B	330	333	parallel
Strand 3	B	339	343	anti-parallel
Strand 4	B	396	400	anti-parallel
Strand 5	B	379	380	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	32	first strand
Strand 2	C	376	377	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	97	first strand
Strand 2	C	257	260	anti-parallel
Strand 3	C	239	244	anti-parallel
Strand 4	C	209	213	parallel
Strand 5	C	175	181	parallel
Strand 6	C	117	122	parallel
Strand 7	C	138	143	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	156	first strand
Strand 2	C	330	333	parallel
Strand 3	C	339	343	anti-parallel
Strand 4	C	396	400	anti-parallel
Strand 5	C	379	380	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	32	first strand
Strand 2	D	376	377	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	97	first strand
Strand 2	D	257	260	anti-parallel
Strand 3	D	239	244	anti-parallel
Strand 4	D	209	213	parallel
Strand 5	D	175	181	parallel
Strand 6	D	117	122	parallel
Strand 7	D	138	143	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	156	first strand
Strand 2	D	330	333	parallel
Strand 3	D	339	343	anti-parallel
Strand 4	D	396	400	anti-parallel
Strand 5	D	379	380	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4WP0

Analysis of interatomic Contacts of Structural Units in PDB entry:
4WP0