Analysis of interatomic Contacts of Structural Units in PDB entry:
4WP3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4WP3 entry

There are 4 chains in PDB entry 4WP3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 28	ALA 218
B	ARG 29	LEU 217
C	VAL 28	ALA 218
D	ARG 29	ARG 185

There are 35 helices in PDB entry 4WP3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	43	Right-handed alpha
Helix 2	AA2	A	64	73	Right-handed alpha
Helix 3	AA3	A	73	95	Right-handed alpha
Helix 4	AA4	A	113	130	Right-handed alpha
Helix 5	AA5	A	157	173	Right-handed alpha
Helix 6	AA6	A	181	188	Right-handed alpha
Helix 7	AA7	B	30	43	Right-handed alpha
Helix 8	AA8	B	64	73	Right-handed alpha
Helix 9	AA9	B	73	95	Right-handed alpha
Helix 10	AB1	B	113	132	Right-handed alpha
Helix 11	AB2	B	161	173	Right-handed alpha
Helix 12	AB3	B	181	188	Right-handed alpha
Helix 13	AB4	C	30	43	Right-handed alpha
Helix 14	AB5	C	64	73	Right-handed alpha
Helix 15	AB6	C	73	95	Right-handed alpha
Helix 16	AB7	C	113	134	Right-handed alpha
Helix 17	AB8	C	156	173	Right-handed alpha
Helix 18	AB9	C	182	188	Right-handed alpha
Helix 19	AC1	D	30	43	Right-handed alpha
Helix 20	AC2	D	64	72	Right-handed alpha
Helix 21	AC3	D	77	95	Right-handed alpha
Helix 22	AC4	D	113	132	Right-handed alpha
Helix 23	AC5	D	156	173	Right-handed alpha
Helix 24	AC6	D	182	188	Right-handed alpha
Helix 25	AC7	E	30	43	Right-handed alpha
Helix 26	AC8	E	64	72	Right-handed alpha
Helix 27	AC9	E	75	95	Right-handed alpha
Helix 28	AD1	E	113	131	Right-handed alpha
Helix 29	AD2	E	161	173	Right-handed alpha
Helix 30	AD3	E	181	188	Right-handed alpha
Helix 31	AD4	F	30	43	Right-handed alpha
Helix 32	AD5	F	64	95	Right-handed alpha
Helix 33	AD6	F	113	132	Right-handed alpha
Helix 34	AD7	F	160	173	Right-handed alpha
Helix 35	AD8	F	182	188	Right-handed alpha

There are 8 sheets in PDB entry 4WP3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	103	first strand
Strand 2	A	106	111	anti-parallel
Strand 3	A	56	62	anti-parallel
Strand 4	A	142	148	anti-parallel
Strand 5	A	178	180	parallel
Strand 6	A	211	215	anti-parallel
Strand 7	A	200	202	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	103	first strand
Strand 2	B	106	111	anti-parallel
Strand 3	B	56	62	anti-parallel
Strand 4	B	142	148	anti-parallel
Strand 5	B	178	180	parallel
Strand 6	B	211	215	anti-parallel
Strand 7	B	200	202	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	103	first strand
Strand 2	C	106	111	anti-parallel
Strand 3	C	54	62	anti-parallel
Strand 4	C	142	150	anti-parallel
Strand 5	C	178	181	parallel
Strand 6	C	211	217	anti-parallel
Strand 7	C	195	196	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	103	first strand
Strand 2	C	106	111	anti-parallel
Strand 3	C	54	62	anti-parallel
Strand 4	C	142	150	anti-parallel
Strand 5	C	178	181	parallel
Strand 6	C	211	217	anti-parallel
Strand 7	C	200	202	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	103	first strand
Strand 2	D	106	111	anti-parallel
Strand 3	D	54	62	anti-parallel
Strand 4	D	142	150	anti-parallel
Strand 5	D	178	181	parallel
Strand 6	D	211	215	anti-parallel
Strand 7	D	200	202	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	103	first strand
Strand 2	E	106	111	anti-parallel
Strand 3	E	56	62	anti-parallel
Strand 4	E	142	148	anti-parallel
Strand 5	E	178	180	parallel
Strand 6	E	211	215	anti-parallel
Strand 7	E	200	202	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	103	first strand
Strand 2	F	106	111	anti-parallel
Strand 3	F	54	62	anti-parallel
Strand 4	F	142	150	anti-parallel
Strand 5	F	178	181	parallel
Strand 6	F	211	217	anti-parallel
Strand 7	F	195	196	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	103	first strand
Strand 2	F	106	111	anti-parallel
Strand 3	F	54	62	anti-parallel
Strand 4	F	142	150	anti-parallel
Strand 5	F	178	181	parallel
Strand 6	F	211	217	anti-parallel
Strand 7	F	200	202	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4WP3

Analysis of interatomic Contacts of Structural Units in PDB entry:
4WP3