Analysis of interatomic Contacts of Structural Units in PDB entry:
4WP5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WP5 entry

There are 2 chains in PDB entry 4WP5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 364VAL 564
B
 MET 1TYR 183
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4WP5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
381 398Right-handed alpha
Helix 2
AA2
A
400 406Right-handed alpha
Helix 3
AA3
A
423 436Right-handed alpha
Helix 4
AA4
A
456 462Right-handed alpha
Helix 5
AA5
A
474 478Right-handed 310
Helix 6
AA6
B
2 21Right-handed alpha
Helix 7
AA7
B
25 32Right-handed 310
Helix 8
AA8
B
33 40Right-handed alpha
Helix 9
AA9
B
55 67Right-handed alpha
Helix 10
AB1
B
106 113Right-handed alpha
Helix 11
AB2
B
168 172Right-handed alpha
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There are 4 sheets in PDB entry 4WP5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 453first strand
Strand 2
A
411 416anti-parallel
Strand 3
A
541 555parallel
Strand 4
A
518 532anti-parallel
Strand 5
A
497 513anti-parallel
Strand 6
A
466 468anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 453first strand
Strand 2
A
411 416anti-parallel
Strand 3
A
541 555parallel
Strand 4
A
518 532anti-parallel
Strand 5
A
497 513anti-parallel
Strand 6
A
479 489anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
45 48anti-parallel
Strand 3
B
173 180parallel
Strand 4
B
145 157anti-parallel
Strand 5
B
122 135anti-parallel
Strand 6
B
83 98anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
45 48anti-parallel
Strand 3
B
173 180parallel
Strand 4
B
145 157anti-parallel
Strand 5
B
182 183anti-parallel
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