Analysis of interatomic Contacts of Structural Units in PDB entry:
4WPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WPD entry

There are 2 chains in PDB entry 4WPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 367
B
 MET 1ASN 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 37 helices in PDB entry 4WPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 12Right-handed alpha
Helix 2
AA2
A
25 35Right-handed alpha
Helix 3
AA3
A
45 55Right-handed alpha
Helix 4
AA4
A
62 66Right-handed 310
Helix 5
AA5
A
67 71Right-handed 310
Helix 6
AA6
A
74 82Right-handed alpha
Helix 7
AA7
A
88 108Right-handed alpha
Helix 8
AA8
A
117 121Right-handed alpha
Helix 9
AA9
A
123 135Right-handed alpha
Helix 10
AB1
A
140 156Right-handed alpha
Helix 11
AB2
A
165 179Right-handed alpha
Helix 12
AB3
A
180 182Right-handed 310
Helix 13
AB4
A
183 192Right-handed alpha
Helix 14
AB5
A
195 208Right-handed alpha
Helix 15
AB6
A
210 228Right-handed alpha
Helix 16
AB7
A
230 237Right-handed alpha
Helix 17
AB8
A
239 251Right-handed alpha
Helix 18
AB9
A
281 286Right-handed alpha
Helix 19
AC1
A
319 338Right-handed alpha
Helix 20
AC2
B
5 12Right-handed alpha
Helix 21
AC3
B
25 35Right-handed alpha
Helix 22
AC4
B
45 55Right-handed alpha
Helix 23
AC5
B
62 66Right-handed 310
Helix 24
AC6
B
67 71Right-handed 310
Helix 25
AC7
B
74 82Right-handed alpha
Helix 26
AC8
B
88 109Right-handed alpha
Helix 27
AC9
B
117 121Right-handed alpha
Helix 28
AD1
B
123 135Right-handed alpha
Helix 29
AD2
B
140 156Right-handed alpha
Helix 30
AD3
B
165 179Right-handed alpha
Helix 31
AD4
B
183 191Right-handed alpha
Helix 32
AD5
B
195 209Right-handed alpha
Helix 33
AD6
B
210 228Right-handed alpha
Helix 34
AD7
B
230 237Right-handed alpha
Helix 35
AD8
B
239 251Right-handed alpha
Helix 36
AD9
B
281 286Right-handed alpha
Helix 37
AE1
B
319 337Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 4WPD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
21 23anti-parallel
Strand 3
A
277 280parallel
Strand 4
A
257 261anti-parallel
Strand 5
A
39 40anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 116first strand
Strand 2
A
357 365anti-parallel
Strand 3
A
339 348anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 267first strand
Strand 2
A
270 272anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 16first strand
Strand 2
B
21 23anti-parallel
Strand 3
B
277 280parallel
Strand 4
B
257 261anti-parallel
Strand 5
B
39 40anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 116first strand
Strand 2
B
357 366anti-parallel
Strand 3
B
338 348anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 267first strand
Strand 2
B
270 272anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il