Analysis of interatomic Contacts of Structural Units in PDB entry:
4WPG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WPG entry

There is 1 chain in PDB entry 4WPG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -3LYS 283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 4WPG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 22Right-handed alpha
Helix 2
AA2
A
38 50Right-handed alpha
Helix 3
AA3
A
64 68Right-handed 310
Helix 4
AA4
A
70 79Right-handed alpha
Helix 5
AA5
A
79 93Right-handed alpha
Helix 6
AA6
A
103 105Right-handed 310
Helix 7
AA7
A
125 142Right-handed alpha
Helix 8
AA8
A
160 170Right-handed alpha
Helix 9
AA9
A
188 201Right-handed alpha
Helix 10
AB1
A
219 228Right-handed alpha
Helix 11
AB2
A
257 263Right-handed alpha
Helix 12
AB3
A
269 282Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 4WPG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
2 5parallel
Strand 3
A
53 56parallel
Strand 4
A
95 101parallel
Strand 5
A
145 150parallel
Strand 6
A
206 209parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
186 187parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 178first strand
Strand 2
A
234 238parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il