Analysis of interatomic Contacts of Structural Units in PDB entry:
4WSV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4WSV entry

There are 5 chains in PDB entry 4WSV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	PRO 324
C	SER 0	PRO 324
E	SER 0	PRO 324
B	GLY 1	LEU 168
D	GLY 1	TYR 119

There are 27 helices in PDB entry 4WSV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	63	Right-handed alpha
Helix 2	AA2	A	64	71	Right-handed 310
Helix 3	AA3	A	97	107	Right-handed alpha
Helix 4	AA4	A	118	122	Right-handed 310
Helix 5	AA5	A	185	193	Right-handed alpha
Helix 6	AA6	C	56	63	Right-handed alpha
Helix 7	AA7	C	64	71	Right-handed 310
Helix 8	AA8	C	97	107	Right-handed alpha
Helix 9	AA9	C	118	122	Right-handed 310
Helix 10	AB1	C	185	193	Right-handed alpha
Helix 11	AB2	E	56	63	Right-handed alpha
Helix 12	AB3	E	64	71	Right-handed 310
Helix 13	AB4	E	97	107	Right-handed alpha
Helix 14	AB5	E	118	122	Right-handed 310
Helix 15	AB6	E	185	193	Right-handed alpha
Helix 16	AB7	B	37	59	Right-handed alpha
Helix 17	AB8	B	74	127	Right-handed alpha
Helix 18	AB9	B	145	154	Right-handed alpha
Helix 19	AC1	B	159	161	Right-handed 310
Helix 20	AC2	B	162	167	Right-handed alpha
Helix 21	AC3	D	37	59	Right-handed alpha
Helix 22	AC4	D	74	127	Right-handed alpha
Helix 23	AC5	D	145	154	Right-handed alpha
Helix 24	AC6	D	159	163	Right-handed 310
Helix 25	AC7	F	37	59	Right-handed alpha
Helix 26	AC8	F	74	127	Right-handed alpha
Helix 27	AC9	F	145	154	Right-handed alpha

There are 27 sheets in PDB entry 4WSV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	36	first strand
Strand 2	B	22	28	anti-parallel
Strand 3	A	2	7	anti-parallel
Strand 4	B	137	140	anti-parallel
Strand 5	B	130	131	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	24	25	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	315	317	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	294	295	parallel
Strand 3	A	307	308	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	79	81	parallel
Strand 3	A	267	269	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	108	115	anti-parallel
Strand 3	A	254	260	anti-parallel
Strand 4	A	174	182	anti-parallel
Strand 5	A	249	252	anti-parallel
Strand 6	A	148	150	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	108	115	anti-parallel
Strand 3	A	254	260	anti-parallel
Strand 4	A	174	182	anti-parallel
Strand 5	A	227	235	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	167	first strand
Strand 2	A	240	245	anti-parallel
Strand 3	A	200	204	anti-parallel
Strand 4	A	208	211	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	287	first strand
Strand 2	A	281	283	anti-parallel
Strand 3	A	301	303	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	36	first strand
Strand 2	D	22	28	anti-parallel
Strand 3	C	2	7	anti-parallel
Strand 4	D	137	140	anti-parallel
Strand 5	D	130	131	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	C	24	25	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	315	317	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	294	295	parallel
Strand 3	C	307	308	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	79	81	parallel
Strand 3	C	267	269	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	75	first strand
Strand 2	C	108	115	anti-parallel
Strand 3	C	254	260	anti-parallel
Strand 4	C	174	182	anti-parallel
Strand 5	C	249	252	anti-parallel
Strand 6	C	148	150	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	75	first strand
Strand 2	C	108	115	anti-parallel
Strand 3	C	254	260	anti-parallel
Strand 4	C	174	182	anti-parallel
Strand 5	C	227	235	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	167	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	200	203	anti-parallel
Strand 4	C	208	211	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	286	287	first strand
Strand 2	C	281	283	anti-parallel
Strand 3	C	301	303	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	36	first strand
Strand 2	F	22	28	anti-parallel
Strand 3	E	2	7	anti-parallel
Strand 4	F	137	140	anti-parallel
Strand 5	F	130	131	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	16	first strand
Strand 2	E	24	25	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	315	317	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	34	first strand
Strand 2	E	294	295	parallel
Strand 3	E	307	308	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	51	first strand
Strand 2	E	79	81	parallel
Strand 3	E	267	269	parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	75	first strand
Strand 2	E	110	115	anti-parallel
Strand 3	E	254	259	anti-parallel
Strand 4	E	174	182	anti-parallel
Strand 5	E	249	252	anti-parallel
Strand 6	E	148	150	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	75	first strand
Strand 2	E	110	115	anti-parallel
Strand 3	E	254	259	anti-parallel
Strand 4	E	174	182	anti-parallel
Strand 5	E	227	235	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	167	first strand
Strand 2	E	240	245	anti-parallel
Strand 3	E	200	204	anti-parallel
Strand 4	E	208	211	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	286	287	first strand
Strand 2	E	281	283	anti-parallel
Strand 3	E	301	303	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4WSV

Analysis of interatomic Contacts of Structural Units in PDB entry:
4WSV