Analysis of interatomic Contacts of Structural Units in PDB entry:
4WV3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4WV3 entry

There are 2 chains in PDB entry 4WV3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 522
B	MET 1	LEU 522

There are 40 helices in PDB entry 4WV3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	6	Right-handed 310
Helix 2	AA2	A	13	18	Right-handed alpha
Helix 3	AA3	A	38	55	Right-handed alpha
Helix 4	AA4	A	70	84	Right-handed alpha
Helix 5	AA5	A	95	106	Right-handed alpha
Helix 6	AA6	A	117	123	Right-handed alpha
Helix 7	AA7	A	124	128	Right-handed 310
Helix 8	AA8	A	148	153	Right-handed alpha
Helix 9	AA9	A	190	199	Right-handed alpha
Helix 10	AB1	A	220	227	Right-handed alpha
Helix 11	AB2	A	228	234	Right-handed alpha
Helix 12	AB3	A	247	259	Right-handed alpha
Helix 13	AB4	A	266	275	Right-handed alpha
Helix 14	AB5	A	278	282	Right-handed 310
Helix 15	AB6	A	298	310	Right-handed alpha
Helix 16	AB7	A	380	387	Right-handed alpha
Helix 17	AB8	A	425	434	Right-handed alpha
Helix 18	AB9	A	469	484	Right-handed alpha
Helix 19	AC1	A	485	489	Right-handed 310
Helix 20	AC2	A	508	521	Right-handed alpha
Helix 21	AC3	B	13	18	Right-handed alpha
Helix 22	AC4	B	38	55	Right-handed alpha
Helix 23	AC5	B	70	83	Right-handed alpha
Helix 24	AC6	B	95	106	Right-handed alpha
Helix 25	AC7	B	117	123	Right-handed alpha
Helix 26	AC8	B	124	128	Right-handed 310
Helix 27	AC9	B	148	153	Right-handed alpha
Helix 28	AD1	B	190	199	Right-handed alpha
Helix 29	AD2	B	220	227	Right-handed alpha
Helix 30	AD3	B	228	234	Right-handed alpha
Helix 31	AD4	B	247	259	Right-handed alpha
Helix 32	AD5	B	266	275	Right-handed alpha
Helix 33	AD6	B	278	282	Right-handed 310
Helix 34	AD7	B	298	310	Right-handed alpha
Helix 35	AD8	B	320	323	Right-handed 310
Helix 36	AD9	B	380	387	Right-handed alpha
Helix 37	AE1	B	414	416	Right-handed 310
Helix 38	AE2	B	425	434	Right-handed alpha
Helix 39	AE3	B	469	484	Right-handed alpha
Helix 40	AE4	B	508	522	Right-handed alpha

There are 13 sheets in PDB entry 4WV3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	37	first strand
Strand 2	A	27	30	anti-parallel
Strand 3	A	237	239	parallel
Strand 4	A	211	214	parallel
Strand 5	A	262	265	parallel
Strand 6	A	289	292	parallel
Strand 7	A	313	318	parallel
Strand 8	A	325	328	anti-parallel
Strand 9	A	341	342	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	89	first strand
Strand 2	A	62	66	parallel
Strand 3	A	110	114	parallel
Strand 4	A	133	137	parallel
Strand 5	A	146	147	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	175	first strand
Strand 2	A	183	188	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	351	first strand
Strand 2	A	364	369	anti-parallel
Strand 3	A	392	401	anti-parallel
Strand 4	A	388	389	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	351	first strand
Strand 2	A	364	369	anti-parallel
Strand 3	A	392	401	anti-parallel
Strand 4	A	407	412	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	419	first strand
Strand 2	A	422	424	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	448	first strand
Strand 2	A	454	462	anti-parallel
Strand 3	A	492	496	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	37	first strand
Strand 2	B	27	30	anti-parallel
Strand 3	B	237	239	parallel
Strand 4	B	211	214	parallel
Strand 5	B	262	265	parallel
Strand 6	B	289	292	parallel
Strand 7	B	313	318	parallel
Strand 8	B	325	328	anti-parallel
Strand 9	B	341	342	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	133	137	parallel
Strand 3	B	110	114	parallel
Strand 4	B	62	66	parallel
Strand 5	B	86	89	parallel
Strand 6	B	169	175	parallel
Strand 7	B	183	188	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	351	first strand
Strand 2	B	364	369	anti-parallel
Strand 3	B	392	401	anti-parallel
Strand 4	B	388	389	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	351	first strand
Strand 2	B	364	369	anti-parallel
Strand 3	B	392	401	anti-parallel
Strand 4	B	407	412	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	419	first strand
Strand 2	B	422	424	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	447	first strand
Strand 2	B	455	462	anti-parallel
Strand 3	B	492	495	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4WV3

Analysis of interatomic Contacts of Structural Units in PDB entry:
4WV3