Analysis of interatomic Contacts of Structural Units in PDB entry:
4WV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WV5 entry

There are 2 chains in PDB entry 4WV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 395GLU 543
B
 ASP 395GLU 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 4WV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
449 453Right-handed 310
Helix 2
AA2
A
511 525Right-handed alpha
Helix 3
AA3
A
525 536Right-handed alpha
Helix 4
AA4
B
449 453Right-handed 310
Helix 5
AA5
B
515 525Right-handed alpha
Helix 6
AA6
B
525 534Right-handed alpha
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There are 4 sheets in PDB entry 4WV5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 414first strand
Strand 2
A
401 405anti-parallel
Strand 3
A
438 444anti-parallel
Strand 4
A
454 461anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 503first strand
Strand 2
A
486 492anti-parallel
Strand 3
A
474 480anti-parallel
Strand 4
A
422 430anti-parallel
Strand 5
A
541 542parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
409 414first strand
Strand 2
B
401 405anti-parallel
Strand 3
B
438 444anti-parallel
Strand 4
B
454 461anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
498 503first strand
Strand 2
B
486 492anti-parallel
Strand 3
B
474 480anti-parallel
Strand 4
B
422 430anti-parallel
Strand 5
B
541 542parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il