Analysis of interatomic Contacts of Structural Units in PDB entry:
4WV8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4WV8 entry

There are 4 chains in PDB entry 4WV8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PRO 236
B	MET 1	SER 237
C	MET 1	ASN 241
D	MET 1	ASN 241

There are 11 helices in PDB entry 4WV8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	65	Right-handed 310
Helix 2	AA2	A	104	108	Right-handed 310
Helix 3	AA3	A	170	172	Right-handed 310
Helix 4	AA4	A	195	200	Right-handed alpha
Helix 5	AA5	B	62	65	Right-handed 310
Helix 6	AA6	B	104	108	Right-handed 310
Helix 7	AA7	B	195	200	Right-handed alpha
Helix 8	AA8	C	104	108	Right-handed 310
Helix 9	AA9	C	195	200	Right-handed alpha
Helix 10	AB1	D	104	108	Right-handed 310
Helix 11	AB2	D	195	200	Right-handed alpha

There are 18 sheets in PDB entry 4WV8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	27	first strand
Strand 2	A	33	34	anti-parallel
Strand 3	A	223	233	anti-parallel
Strand 4	A	3	9	anti-parallel
Strand 5	B	3	9	anti-parallel
Strand 6	B	227	233	anti-parallel
Strand 7	B	69	77	anti-parallel
Strand 8	B	223	224	anti-parallel
Strand 9	B	33	34	anti-parallel
Strand 10	B	26	27	anti-parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	193	first strand
Strand 2	A	174	181	anti-parallel
Strand 3	A	162	169	anti-parallel
Strand 4	A	69	77	anti-parallel
Strand 5	A	223	233	anti-parallel
Strand 6	A	3	9	anti-parallel
Strand 7	B	3	9	anti-parallel
Strand 8	B	227	233	anti-parallel
Strand 9	B	69	77	anti-parallel
Strand 10	B	162	169	anti-parallel
Strand 11	B	174	181	anti-parallel
Strand 12	B	186	193	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	23	first strand
Strand 2	A	48	53	anti-parallel
Strand 3	A	203	212	anti-parallel
Strand 4	A	57	58	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	23	first strand
Strand 2	A	48	53	anti-parallel
Strand 3	A	203	212	anti-parallel
Strand 4	A	88	95	anti-parallel
Strand 5	A	121	126	anti-parallel
Strand 6	A	138	143	anti-parallel
Strand 7	A	150	153	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	39	first strand
Strand 2	A	42	43	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	66	67	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	23	first strand
Strand 2	B	48	53	anti-parallel
Strand 3	B	203	212	anti-parallel
Strand 4	B	57	58	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	23	first strand
Strand 2	B	48	53	anti-parallel
Strand 3	B	203	212	anti-parallel
Strand 4	B	88	95	anti-parallel
Strand 5	B	121	126	anti-parallel
Strand 6	B	138	143	anti-parallel
Strand 7	B	150	153	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	39	first strand
Strand 2	B	42	43	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	66	67	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	27	first strand
Strand 2	C	33	34	anti-parallel
Strand 3	C	223	234	anti-parallel
Strand 4	C	3	9	anti-parallel
Strand 5	D	3	9	anti-parallel
Strand 6	D	223	233	anti-parallel
Strand 7	D	33	34	anti-parallel
Strand 8	D	26	27	anti-parallel

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There are 12 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	193	first strand
Strand 2	C	174	181	anti-parallel
Strand 3	C	162	169	anti-parallel
Strand 4	C	67	77	anti-parallel
Strand 5	C	223	234	anti-parallel
Strand 6	C	3	9	anti-parallel
Strand 7	D	3	9	anti-parallel
Strand 8	D	223	233	anti-parallel
Strand 9	D	69	77	anti-parallel
Strand 10	D	162	169	anti-parallel
Strand 11	D	174	181	anti-parallel
Strand 12	D	186	193	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	23	first strand
Strand 2	C	48	53	anti-parallel
Strand 3	C	203	212	anti-parallel
Strand 4	C	57	58	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	23	first strand
Strand 2	C	48	53	anti-parallel
Strand 3	C	203	212	anti-parallel
Strand 4	C	88	95	anti-parallel
Strand 5	C	121	126	anti-parallel
Strand 6	C	138	143	anti-parallel
Strand 7	C	150	153	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	39	first strand
Strand 2	C	42	43	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	23	first strand
Strand 2	D	48	53	anti-parallel
Strand 3	D	203	212	anti-parallel
Strand 4	D	57	58	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	23	first strand
Strand 2	D	48	53	anti-parallel
Strand 3	D	203	212	anti-parallel
Strand 4	D	88	95	anti-parallel
Strand 5	D	121	126	anti-parallel
Strand 6	D	138	143	anti-parallel
Strand 7	D	150	153	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	39	first strand
Strand 2	D	42	43	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4WV8

Analysis of interatomic Contacts of Structural Units in PDB entry:
4WV8