Analysis of interatomic Contacts of Structural Units in PDB entry:
4WVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WVJ entry

There are 2 chains in PDB entry 4WVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 13GLN 530
D
 GLY 201LYS 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 4WVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 38Right-handed alpha
Helix 2
AA2
A
48 57Right-handed alpha
Helix 3
AA3
A
72 79Right-handed alpha
Helix 4
AA4
A
88 93Right-handed alpha
Helix 5
AA5
A
96 103Right-handed alpha
Helix 6
AA6
A
134 136Right-handed 310
Helix 7
AA7
A
137 147Right-handed alpha
Helix 8
AA8
A
159 170Right-handed alpha
Helix 9
AA9
A
191 207Right-handed alpha
Helix 10
AB1
A
215 225Right-handed alpha
Helix 11
AB2
A
234 236Right-handed 310
Helix 12
AB3
A
237 245Right-handed alpha
Helix 13
AB4
A
278 289Right-handed alpha
Helix 14
AB5
A
292 303Right-handed alpha
Helix 15
AB6
A
310 318Right-handed alpha
Helix 16
AB7
A
320 333Right-handed alpha
Helix 17
AB8
A
341 359Right-handed alpha
Helix 18
AB9
A
362 376Right-handed alpha
Helix 19
AC1
A
454 456Right-handed 310
Helix 20
AC2
A
457 463Right-handed alpha
Helix 21
AC3
A
476 478Right-handed 310
Helix 22
AC4
A
505 510Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 4WVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
14 16parallel
Strand 3
A
65 69parallel
Strand 4
A
264 272anti-parallel
Strand 5
A
112 117anti-parallel
Strand 6
A
307 308anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
14 16parallel
Strand 3
A
65 69parallel
Strand 4
A
264 272anti-parallel
Strand 5
A
334 335parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
108 109anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 153first strand
Strand 2
A
228 233parallel
Strand 3
A
120 124anti-parallel
Strand 4
A
248 251anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 178first strand
Strand 2
A
181 188anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 513first strand
Strand 2
A
492 496anti-parallel
Strand 3
A
425 432anti-parallel
Strand 4
D
208 211parallel
Strand 5
A
378 385parallel
Strand 6
A
397 402anti-parallel
Strand 7
A
517 522anti-parallel
Strand 8
A
415 419anti-parallel
Strand 9
A
425 432anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 452first strand
Strand 2
A
444 447anti-parallel
Strand 3
A
438 441anti-parallel
Strand 4
A
473 474anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il