Analysis of interatomic Contacts of Structural Units in PDB entry:
4WVM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4WVM entry

There are 2 chains in PDB entry 4WVM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 4	LEU 703
B	ASP 4	LEU 700

There are 37 helices in PDB entry 4WVM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	68	Right-handed alpha
Helix 2	AA2	A	71	80	Right-handed alpha
Helix 3	AA3	A	86	92	Right-handed 310
Helix 4	AA4	A	167	176	Right-handed alpha
Helix 5	AA5	A	192	201	Right-handed alpha
Helix 6	AA6	A	218	229	Right-handed alpha
Helix 7	AA7	A	268	291	Right-handed alpha
Helix 8	AA8	A	292	298	Right-handed alpha
Helix 9	AA9	A	298	331	Right-handed alpha
Helix 10	AB1	A	338	350	Right-handed alpha
Helix 11	AB2	A	353	376	Right-handed alpha
Helix 12	AB3	A	377	379	Right-handed 310
Helix 13	AB4	A	388	398	Right-handed alpha
Helix 14	AB5	A	416	427	Right-handed alpha
Helix 15	AB6	A	444	447	Right-handed 310
Helix 16	AB7	A	448	469	Right-handed alpha
Helix 17	AB8	A	512	516	Right-handed 310
Helix 18	AB9	A	518	524	Right-handed alpha
Helix 19	AC1	A	607	611	Right-handed 310
Helix 20	AC2	B	61	69	Right-handed alpha
Helix 21	AC3	B	72	81	Right-handed alpha
Helix 22	AC4	B	89	95	Right-handed 310
Helix 23	AC5	B	164	179	Right-handed alpha
Helix 24	AC6	B	194	201	Right-handed alpha
Helix 25	AC7	B	219	230	Right-handed alpha
Helix 26	AC8	B	265	290	Right-handed alpha
Helix 27	AC9	B	291	297	Right-handed alpha
Helix 28	AD1	B	297	328	Right-handed alpha
Helix 29	AD2	B	336	349	Right-handed alpha
Helix 30	AD3	B	352	379	Right-handed alpha
Helix 31	AD4	B	387	396	Right-handed alpha
Helix 32	AD5	B	415	427	Right-handed alpha
Helix 33	AD6	B	438	446	Right-handed 310
Helix 34	AD7	B	447	467	Right-handed alpha
Helix 35	AD8	B	509	513	Right-handed 310
Helix 36	AD9	B	515	521	Right-handed alpha
Helix 37	AE1	B	602	606	Right-handed 310

There are 10 sheets in PDB entry 4WVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	8	first strand
Strand 2	A	242	248	anti-parallel
Strand 3	A	139	146	anti-parallel
Strand 4	A	103	115	anti-parallel
Strand 5	A	45	56	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	20	first strand
Strand 2	A	139	146	anti-parallel
Strand 3	A	103	115	anti-parallel
Strand 4	A	149	155	anti-parallel
Strand 5	A	203	208	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	385	first strand
Strand 2	A	475	481	parallel
Strand 3	A	403	409	parallel
Strand 4	A	490	496	anti-parallel
Strand 5	A	499	502	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	542	first strand
Strand 2	A	548	551	anti-parallel
Strand 3	A	698	702	anti-parallel
Strand 4	A	581	590	anti-parallel
Strand 5	A	649	655	anti-parallel
Strand 6	A	660	667	anti-parallel
Strand 7	A	670	678	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	571	573	first strand
Strand 2	A	685	690	anti-parallel
Strand 3	A	592	598	anti-parallel
Strand 4	A	618	624	anti-parallel
Strand 5	A	628	633	anti-parallel
Strand 6	A	636	640	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	9	first strand
Strand 2	B	240	248	anti-parallel
Strand 3	B	140	157	anti-parallel
Strand 4	B	104	116	anti-parallel
Strand 5	B	47	57	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	140	157	anti-parallel
Strand 3	B	203	209	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	383	384	first strand
Strand 2	B	472	478	parallel
Strand 3	B	402	408	parallel
Strand 4	B	487	493	anti-parallel
Strand 5	B	496	499	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	540	first strand
Strand 2	B	545	547	anti-parallel
Strand 3	B	696	699	anti-parallel
Strand 4	B	576	583	anti-parallel
Strand 5	B	644	650	anti-parallel
Strand 6	B	655	662	anti-parallel
Strand 7	B	665	673	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	568	first strand
Strand 2	B	681	685	anti-parallel
Strand 3	B	588	592	anti-parallel
Strand 4	B	613	617	anti-parallel
Strand 5	B	625	628	anti-parallel
Strand 6	B	631	634	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4WVM

Analysis of interatomic Contacts of Structural Units in PDB entry:
4WVM