Analysis of interatomic Contacts of Structural Units in PDB entry:
4WVY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4WVY entry

There are 2 chains in PDB entry 4WVY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 4	THR 449
B	HIS 26	ASP 457

There are 35 helices in PDB entry 4WVY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	17	Right-handed alpha
Helix 2	AA2	A	18	20	Right-handed 310
Helix 3	AA3	A	43	59	Right-handed alpha
Helix 4	AA4	A	76	89	Right-handed alpha
Helix 5	AA5	A	99	103	Right-handed alpha
Helix 6	AA6	A	110	119	Right-handed alpha
Helix 7	AA7	A	174	184	Right-handed alpha
Helix 8	AA8	A	207	211	Right-handed 310
Helix 9	AA9	A	241	249	Right-handed alpha
Helix 10	AB1	A	258	262	Right-handed 310
Helix 11	AB2	A	273	290	Right-handed alpha
Helix 12	AB3	A	304	308	Right-handed 310
Helix 13	AB4	A	309	321	Right-handed alpha
Helix 14	AB5	A	352	357	Right-handed alpha
Helix 15	AB6	A	368	384	Right-handed alpha
Helix 16	AB7	A	388	402	Right-handed alpha
Helix 17	AB8	A	403	410	Right-handed alpha
Helix 18	AB9	A	410	421	Right-handed alpha
Helix 19	AC1	A	427	438	Right-handed alpha
Helix 20	AC2	A	440	449	Right-handed alpha
Helix 21	AC3	B	49	65	Right-handed alpha
Helix 22	AC4	B	82	93	Right-handed alpha
Helix 23	AC5	B	106	109	Right-handed 310
Helix 24	AC6	B	114	125	Right-handed alpha
Helix 25	AC7	B	174	183	Right-handed alpha
Helix 26	AC8	B	243	251	Right-handed alpha
Helix 27	AC9	B	268	286	Right-handed alpha
Helix 28	AD1	B	300	303	Right-handed 310
Helix 29	AD2	B	304	316	Right-handed alpha
Helix 30	AD3	B	348	353	Right-handed alpha
Helix 31	AD4	B	362	377	Right-handed alpha
Helix 32	AD5	B	382	396	Right-handed alpha
Helix 33	AD6	B	397	415	Right-handed alpha
Helix 34	AD7	B	421	432	Right-handed alpha
Helix 35	AD8	B	434	447	Right-handed alpha

There are 12 sheets in PDB entry 4WVY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	37	first strand
Strand 2	A	40	41	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	98	first strand
Strand 2	A	299	303	parallel
Strand 3	A	327	332	parallel
Strand 4	A	66	70	parallel
Strand 5	A	359	363	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	A	121	125	anti-parallel
Strand 3	A	293	297	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	202	first strand
Strand 2	A	192	195	anti-parallel
Strand 3	A	127	134	anti-parallel
Strand 4	A	230	235	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	139	first strand
Strand 2	A	158	163	anti-parallel
Strand 3	A	168	173	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	338	first strand
Strand 2	A	346	348	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	387	first strand
Strand 2	A	425	426	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	43	first strand
Strand 2	B	46	47	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	104	first strand
Strand 2	B	294	298	parallel
Strand 3	B	322	327	parallel
Strand 4	B	73	76	parallel
Strand 5	B	354	357	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	172	first strand
Strand 2	B	159	163	anti-parallel
Strand 3	B	127	143	anti-parallel
Strand 4	B	232	242	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	206	first strand
Strand 2	B	190	195	anti-parallel
Strand 3	B	127	143	anti-parallel
Strand 4	B	289	292	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	333	first strand
Strand 2	B	340	341	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4WVY

Analysis of interatomic Contacts of Structural Units in PDB entry:
4WVY