Analysis of interatomic Contacts of Structural Units in PDB entry:
4WW5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WW5 entry

There are 2 chains in PDB entry 4WW5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 5ARG 257
B
 MET 1ARG 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4WW5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 14Right-handed alpha
Helix 2
AA2
A
72 85Right-handed alpha
Helix 3
AA3
A
114 117Right-handed 310
Helix 4
AA4
A
121 129Right-handed alpha
Helix 5
AA5
A
135 155Right-handed alpha
Helix 6
AA6
A
191 208Right-handed alpha
Helix 7
AA7
A
213 231Right-handed alpha
Helix 8
AA8
A
232 255Right-handed alpha
Helix 9
AA9
B
24 31Right-handed alpha
Helix 10
AB1
B
43 47Right-handed 310
Helix 11
AB2
B
49 67Right-handed alpha
Helix 12
AB3
B
73 83Right-handed alpha
Helix 13
AB4
B
87 96Right-handed alpha
Helix 14
AB5
B
117 129Right-handed alpha
Helix 15
AB6
B
137 145Right-handed alpha
Helix 16
AB7
B
146 154Right-handed alpha
Helix 17
AB8
B
164 178Right-handed alpha
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There are 6 sheets in PDB entry 4WW5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
29 33anti-parallel
Strand 3
A
49 53anti-parallel
Strand 4
A
103 107anti-parallel
Strand 5
A
94 98anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
118 119anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
187 188anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 172first strand
Strand 2
A
175 180anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
9 20anti-parallel
Strand 3
B
104 110anti-parallel
Strand 4
B
40 42anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
9 20anti-parallel
Strand 3
B
132 134anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il