Analysis of interatomic Contacts of Structural Units in PDB entry:
4WWV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WWV entry

There are 2 chains in PDB entry 4WWV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4LYS 368
B
 GLU 4LYS 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4WWV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 18Right-handed alpha
Helix 2
AA2
A
26 38Right-handed alpha
Helix 3
AA3
A
39 41Right-handed 310
Helix 4
AA4
A
96 100Right-handed 310
Helix 5
AA5
A
137 141Right-handed 310
Helix 6
AA6
A
149 155Right-handed alpha
Helix 7
AA7
A
182 198Right-handed alpha
Helix 8
AA8
A
218 229Right-handed alpha
Helix 9
AA9
A
276 290Right-handed alpha
Helix 10
AB1
A
305 310Right-handed alpha
Helix 11
AB2
A
337 354Right-handed alpha
Helix 12
AB3
B
5 18Right-handed alpha
Helix 13
AB4
B
26 38Right-handed alpha
Helix 14
AB5
B
39 41Right-handed 310
Helix 15
AB6
B
96 100Right-handed 310
Helix 16
AB7
B
137 141Right-handed 310
Helix 17
AB8
B
149 155Right-handed alpha
Helix 18
AB9
B
182 199Right-handed alpha
Helix 19
AC1
B
218 229Right-handed alpha
Helix 20
AC2
B
248 252Right-handed 310
Helix 21
AC3
B
276 290Right-handed alpha
Helix 22
AC4
B
305 310Right-handed alpha
Helix 23
AC5
B
337 353Right-handed alpha
Helix 24
AC6
B
355 360Right-handed alpha
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There are 6 sheets in PDB entry 4WWV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
52 56anti-parallel
Strand 3
A
205 211anti-parallel
Strand 4
A
64 70parallel
Strand 5
A
232 240parallel
Strand 6
A
317 326parallel
Strand 7
A
261 266anti-parallel
Strand 8
A
273 274anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
177 179anti-parallel
Strand 3
A
334 336anti-parallel
Strand 4
A
317 326anti-parallel
Strand 5
A
261 266anti-parallel
Strand 6
A
295 298parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 81first strand
Strand 2
A
87 92anti-parallel
Strand 3
A
142 144anti-parallel
Strand 4
A
115 120anti-parallel
Strand 5
A
104 108anti-parallel
Strand 6
A
163 166anti-parallel
Strand 7
A
75 81anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
52 56anti-parallel
Strand 3
B
205 211anti-parallel
Strand 4
B
64 70parallel
Strand 5
B
232 240parallel
Strand 6
B
317 326parallel
Strand 7
B
261 266anti-parallel
Strand 8
B
273 274anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 173first strand
Strand 2
B
177 179anti-parallel
Strand 3
B
334 336anti-parallel
Strand 4
B
317 326anti-parallel
Strand 5
B
261 266anti-parallel
Strand 6
B
295 298parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 81first strand
Strand 2
B
87 92anti-parallel
Strand 3
B
142 144anti-parallel
Strand 4
B
114 120anti-parallel
Strand 5
B
104 108anti-parallel
Strand 6
B
163 166anti-parallel
Strand 7
B
75 81anti-parallel
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