Analysis of interatomic Contacts of Structural Units in PDB entry:
4WX9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WX9 entry

There are 6 chains in PDB entry 4WX9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 G 1 G 6
D
 C 8 A 13
E
 T 14 C 26
A
 VAL 2ASP 165
B
 VAL 2ASP 165
C
 VAL 2ASP 165
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4WX9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 60Right-handed alpha
Helix 2
AA2
A
74 85Right-handed alpha
Helix 3
AA3
A
95 102Right-handed alpha
Helix 4
AA4
A
107 117Right-handed alpha
Helix 5
AA5
A
125 127Right-handed 310
Helix 6
AA6
A
142 156Right-handed alpha
Helix 7
AA7
A
159 165Right-handed 310
Helix 8
AA8
B
47 59Right-handed alpha
Helix 9
AA9
B
74 87Right-handed alpha
Helix 10
AB1
B
95 102Right-handed alpha
Helix 11
AB2
B
109 117Right-handed alpha
Helix 12
AB3
B
125 127Right-handed 310
Helix 13
AB4
B
142 155Right-handed alpha
Helix 14
AB5
B
158 163Right-handed alpha
Helix 15
AB6
C
47 59Right-handed alpha
Helix 16
AB7
C
74 85Right-handed alpha
Helix 17
AB8
C
95 102Right-handed alpha
Helix 18
AB9
C
107 117Right-handed alpha
Helix 19
AC1
C
125 127Right-handed 310
Helix 20
AC2
C
142 156Right-handed alpha
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There are 6 sheets in PDB entry 4WX9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
3 7parallel
Strand 3
A
14 19anti-parallel
Strand 4
A
22 28anti-parallel
Strand 5
A
68 69parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
129 130parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 28first strand
Strand 2
B
14 19anti-parallel
Strand 3
B
3 7anti-parallel
Strand 4
B
41 42parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 94first strand
Strand 2
B
129 130parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 27first strand
Strand 2
C
14 19anti-parallel
Strand 3
C
3 7anti-parallel
Strand 4
C
41 42parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 94first strand
Strand 2
C
129 130parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il