Analysis of interatomic Contacts of Structural Units in PDB entry:
4WY9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WY9 entry

There is 1 chain in PDB entry 4WY9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 37LYS 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4WY9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 82Right-handed alpha
Helix 2
AA2
A
83 87Right-handed 310
Helix 3
AA3
A
88 101Right-handed alpha
Helix 4
AA4
A
117 124Right-handed alpha
Helix 5
AA5
A
125 128Right-handed 310
Helix 6
AA6
A
155 160Right-handed alpha
Helix 7
AA7
A
161 171Right-handed alpha
Helix 8
AA8
A
219 227Right-handed alpha
Helix 9
AA9
A
228 232Right-handed 310
Helix 10
AB1
A
253 257Right-handed 310
Helix 11
AB2
A
260 265Right-handed alpha
Helix 12
AB3
A
267 269Right-handed 310
Helix 13
AB4
A
270 280Right-handed alpha
Helix 14
AB5
A
317 322Right-handed alpha
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There are 3 sheets in PDB entry 4WY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 152first strand
Strand 2
A
134 140anti-parallel
Strand 3
A
108 113anti-parallel
Strand 4
A
209 218anti-parallel
Strand 5
A
193 203anti-parallel
Strand 6
A
179 180anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 152first strand
Strand 2
A
134 140anti-parallel
Strand 3
A
108 113anti-parallel
Strand 4
A
209 218anti-parallel
Strand 5
A
193 203anti-parallel
Strand 6
A
184 186anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
239 243anti-parallel
Strand 3
A
307 316anti-parallel
Strand 4
A
294 304anti-parallel
Strand 5
A
283 288anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il