Analysis of interatomic Contacts of Structural Units in PDB entry:
4WYA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4WYA entry

There are 4 chains in PDB entry 4WYA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 7	VAL 433
B	GLY 7	VAL 433
C	GLY 7	GLY 434
D	GLY 7	VAL 433

There are 61 helices in PDB entry 4WYA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	21	Right-handed alpha
Helix 2	AA2	A	73	87	Right-handed alpha
Helix 3	AA3	A	98	111	Right-handed alpha
Helix 4	AA4	A	123	141	Right-handed alpha
Helix 5	AA5	A	161	166	Right-handed alpha
Helix 6	AA6	A	196	211	Right-handed alpha
Helix 7	AA7	A	234	248	Right-handed alpha
Helix 8	AA8	A	268	273	Right-handed alpha
Helix 9	AA9	A	299	306	Right-handed alpha
Helix 10	AB1	A	322	338	Right-handed alpha
Helix 11	AB2	A	340	356	Right-handed alpha
Helix 12	AB3	A	357	362	Right-handed 310
Helix 13	AB4	A	384	394	Right-handed alpha
Helix 14	AB5	A	415	432	Right-handed alpha
Helix 15	AB6	B	9	21	Right-handed alpha
Helix 16	AB7	B	61	66	Right-handed alpha
Helix 17	AB8	B	73	87	Right-handed alpha
Helix 18	AB9	B	98	111	Right-handed alpha
Helix 19	AC1	B	123	142	Right-handed alpha
Helix 20	AC2	B	164	168	Right-handed 310
Helix 21	AC3	B	196	211	Right-handed alpha
Helix 22	AC4	B	234	248	Right-handed alpha
Helix 23	AC5	B	267	272	Right-handed 310
Helix 24	AC6	B	282	287	Right-handed 310
Helix 25	AC7	B	298	306	Right-handed alpha
Helix 26	AC8	B	322	338	Right-handed alpha
Helix 27	AC9	B	340	357	Right-handed alpha
Helix 28	AD1	B	358	362	Right-handed 310
Helix 29	AD2	B	384	395	Right-handed alpha
Helix 30	AD3	B	417	432	Right-handed alpha
Helix 31	AD4	C	9	21	Right-handed alpha
Helix 32	AD5	C	61	66	Right-handed alpha
Helix 33	AD6	C	73	87	Right-handed alpha
Helix 34	AD7	C	97	111	Right-handed alpha
Helix 35	AD8	C	123	142	Right-handed alpha
Helix 36	AD9	C	161	166	Right-handed alpha
Helix 37	AE1	C	196	210	Right-handed alpha
Helix 38	AE2	C	234	247	Right-handed alpha
Helix 39	AE3	C	267	272	Right-handed 310
Helix 40	AE4	C	298	308	Right-handed alpha
Helix 41	AE5	C	322	338	Right-handed alpha
Helix 42	AE6	C	340	356	Right-handed alpha
Helix 43	AE7	C	357	362	Right-handed 310
Helix 44	AE8	C	384	395	Right-handed alpha
Helix 45	AE9	C	415	433	Right-handed alpha
Helix 46	AF1	D	9	21	Right-handed alpha
Helix 47	AF2	D	61	66	Right-handed alpha
Helix 48	AF3	D	73	85	Right-handed alpha
Helix 49	AF4	D	97	111	Right-handed alpha
Helix 50	AF5	D	123	142	Right-handed alpha
Helix 51	AF6	D	161	166	Right-handed alpha
Helix 52	AF7	D	196	209	Right-handed alpha
Helix 53	AF8	D	210	212	Right-handed 310
Helix 54	AF9	D	234	247	Right-handed alpha
Helix 55	AG1	D	267	272	Right-handed 310
Helix 56	AG2	D	299	306	Right-handed alpha
Helix 57	AG3	D	322	338	Right-handed alpha
Helix 58	AG4	D	340	357	Right-handed alpha
Helix 59	AG5	D	358	362	Right-handed 310
Helix 60	AG6	D	384	395	Right-handed alpha
Helix 61	AG7	D	415	432	Right-handed alpha

There are 15 sheets in PDB entry 4WYA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	58	first strand
Strand 2	A	45	49	anti-parallel
Strand 3	A	36	38	anti-parallel
Strand 4	B	95	97	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	97	first strand
Strand 2	B	36	42	parallel
Strand 3	B	45	50	anti-parallel
Strand 4	B	53	59	anti-parallel
Strand 5	B	397	398	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	121	first strand
Strand 2	A	293	298	anti-parallel
Strand 3	A	278	281	anti-parallel
Strand 4	A	250	254	parallel
Strand 5	A	214	219	parallel
Strand 6	A	149	152	parallel
Strand 7	A	186	187	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	230	231	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	371	first strand
Strand 2	A	374	379	anti-parallel
Strand 3	A	405	408	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	121	first strand
Strand 2	B	293	297	anti-parallel
Strand 3	B	278	281	anti-parallel
Strand 4	B	250	254	parallel
Strand 5	B	214	219	parallel
Strand 6	B	149	153	parallel
Strand 7	B	187	188	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	224	first strand
Strand 2	B	230	231	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	370	first strand
Strand 2	B	375	379	anti-parallel
Strand 3	B	405	408	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	398	first strand
Strand 2	C	53	59	parallel
Strand 3	C	45	50	anti-parallel
Strand 4	C	36	42	anti-parallel
Strand 5	D	95	96	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	96	first strand
Strand 2	D	36	42	parallel
Strand 3	D	45	50	anti-parallel
Strand 4	D	53	59	anti-parallel
Strand 5	D	397	398	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	121	first strand
Strand 2	C	293	297	anti-parallel
Strand 3	C	278	281	anti-parallel
Strand 4	C	250	254	parallel
Strand 5	C	214	219	parallel
Strand 6	C	149	153	parallel
Strand 7	C	186	188	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	370	first strand
Strand 2	C	375	379	anti-parallel
Strand 3	C	405	408	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	121	first strand
Strand 2	D	293	298	anti-parallel
Strand 3	D	278	281	anti-parallel
Strand 4	D	250	255	parallel
Strand 5	D	214	219	parallel
Strand 6	D	149	153	parallel
Strand 7	D	186	188	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	224	first strand
Strand 2	D	230	231	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	365	370	first strand
Strand 2	D	375	379	anti-parallel
Strand 3	D	405	408	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4WYA

Analysis of interatomic Contacts of Structural Units in PDB entry:
4WYA