Analysis of interatomic Contacts of Structural Units in PDB entry:
4WYI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WYI entry

There is 1 chain in PDB entry 4WYI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 139LYS 523
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4WYI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
155 171Right-handed alpha
Helix 2
AA2
A
232 243Right-handed alpha
Helix 3
AA3
A
255 264Right-handed alpha
Helix 4
AA4
A
284 288Right-handed 310
Helix 5
AA5
A
299 309Right-handed alpha
Helix 6
AA6
A
312 314Right-handed 310
Helix 7
AA7
A
333 341Right-handed alpha
Helix 8
AA8
A
361 373Right-handed alpha
Helix 9
AA9
A
392 400Right-handed alpha
Helix 10
AB1
A
416 423Right-handed alpha
Helix 11
AB2
A
432 442Right-handed alpha
Helix 12
AB3
A
458 465Right-handed alpha
Helix 13
AB4
A
474 486Right-handed alpha
Helix 14
AB5
A
489 504Right-handed alpha
Helix 15
AB6
A
507 522Right-handed alpha
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There are 3 sheets in PDB entry 4WYI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 180first strand
Strand 2
A
142 148parallel
Strand 3
A
246 249parallel
Strand 4
A
272 276parallel
Strand 5
A
294 297parallel
Strand 6
A
316 318parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 411first strand
Strand 2
A
384 388parallel
Strand 3
A
349 353parallel
Strand 4
A
426 430parallel
Strand 5
A
446 450parallel
Strand 6
A
469 471parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 375first strand
Strand 2
A
380 381anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il