Analysis of interatomic Contacts of Structural Units in PDB entry:
4WYK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WYK entry

There are 4 chains in PDB entry 4WYK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 203ALA 549
B
 SER 3SER 140
C
 ASN 202ALA 549
D
 SER 3SER 140
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 4WYK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
205 219Right-handed alpha
Helix 2
AA2
A
235 241Right-handed alpha
Helix 3
AA3
A
249 264Right-handed alpha
Helix 4
AA4
A
280 284Right-handed 310
Helix 5
AA5
A
285 290Right-handed alpha
Helix 6
AA6
A
305 313Right-handed 310
Helix 7
AA7
A
325 330Right-handed 310
Helix 8
AA8
A
333 345Right-handed alpha
Helix 9
AA9
A
380 400Right-handed alpha
Helix 10
AB1
A
402 408Right-handed 310
Helix 11
AB2
A
432 437Right-handed alpha
Helix 12
AB3
A
447 455Right-handed alpha
Helix 13
AB4
A
458 469Right-handed alpha
Helix 14
AB5
A
476 479Right-handed 310
Helix 15
AB6
A
523 525Right-handed 310
Helix 16
AB7
A
540 546Right-handed alpha
Helix 17
AB8
B
5 31Right-handed alpha
Helix 18
AB9
B
31 36Right-handed alpha
Helix 19
AC1
B
54 65Right-handed alpha
Helix 20
AC2
B
81 85Right-handed 310
Helix 21
AC3
C
205 219Right-handed alpha
Helix 22
AC4
C
235 241Right-handed alpha
Helix 23
AC5
C
249 264Right-handed alpha
Helix 24
AC6
C
280 284Right-handed 310
Helix 25
AC7
C
285 290Right-handed alpha
Helix 26
AC8
C
305 313Right-handed 310
Helix 27
AC9
C
325 330Right-handed 310
Helix 28
AD1
C
333 345Right-handed alpha
Helix 29
AD2
C
380 401Right-handed alpha
Helix 30
AD3
C
402 408Right-handed 310
Helix 31
AD4
C
430 438Right-handed 310
Helix 32
AD5
C
447 455Right-handed alpha
Helix 33
AD6
C
458 469Right-handed alpha
Helix 34
AD7
C
505 508Right-handed 310
Helix 35
AD8
C
540 546Right-handed alpha
Helix 36
AD9
D
5 31Right-handed alpha
Helix 37
AE1
D
31 36Right-handed alpha
Helix 38
AE2
D
54 65Right-handed alpha
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There are 8 sheets in PDB entry 4WYK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 221first strand
Strand 2
A
226 228anti-parallel
Strand 3
A
269 271parallel
Strand 4
A
295 297parallel
Strand 5
A
319 321parallel
Strand 6
A
350 351parallel
Strand 7
A
354 355anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 419first strand
Strand 2
A
526 538parallel
Strand 3
A
510 522anti-parallel
Strand 4
A
491 501anti-parallel
Strand 5
A
472 474anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 419first strand
Strand 2
A
526 538parallel
Strand 3
A
510 522anti-parallel
Strand 4
A
491 501anti-parallel
Strand 5
A
480 486anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
39 47anti-parallel
Strand 3
B
124 135parallel
Strand 4
B
107 119anti-parallel
Strand 5
B
90 101anti-parallel
Strand 6
B
68 79anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
220 221first strand
Strand 2
C
226 228anti-parallel
Strand 3
C
269 271parallel
Strand 4
C
295 297parallel
Strand 5
C
319 321parallel
Strand 6
C
350 351parallel
Strand 7
C
354 355anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
410 419first strand
Strand 2
C
527 538parallel
Strand 3
C
510 521anti-parallel
Strand 4
C
491 501anti-parallel
Strand 5
C
472 474anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
410 419first strand
Strand 2
C
527 538parallel
Strand 3
C
510 521anti-parallel
Strand 4
C
491 501anti-parallel
Strand 5
C
480 486anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 53first strand
Strand 2
D
39 47anti-parallel
Strand 3
D
124 135parallel
Strand 4
D
107 119anti-parallel
Strand 5
D
90 99anti-parallel
Strand 6
D
71 79anti-parallel
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