Analysis of interatomic Contacts of Structural Units in PDB entry:
4WYQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WYQ entry

There are 6 chains in PDB entry 4WYQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 269PRO 391
B
 ALA 289ALA 363
C
 UNK 1UNK 11
D
 TYR 269PRO 391
E
 ALA 289ALA 363
F
 UNK 1UNK 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4WYQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
269 285Right-handed alpha
Helix 2
AA2
A
298 316Right-handed alpha
Helix 3
AA3
A
316 338Right-handed alpha
Helix 4
AA4
A
340 364Right-handed alpha
Helix 5
AA5
A
376 388Right-handed alpha
Helix 6
AA6
B
293 306Right-handed alpha
Helix 7
AA7
B
343 363Right-handed alpha
Helix 8
AA8
C
2 7Right-handed alpha
Helix 9
AA9
D
270 285Right-handed alpha
Helix 10
AB1
D
298 316Right-handed alpha
Helix 11
AB2
D
316 338Right-handed alpha
Helix 12
AB3
D
340 364Right-handed alpha
Helix 13
AB4
D
376 389Right-handed alpha
Helix 14
AB5
E
293 306Right-handed alpha
Helix 15
AB6
E
343 363Right-handed alpha
Helix 16
AB7
F
2 7Right-handed alpha
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There are 2 sheets in PDB entry 4WYQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 314first strand
Strand 2
B
323 329anti-parallel
Strand 3
B
335 341anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
309 314first strand
Strand 2
E
323 329anti-parallel
Strand 3
E
335 341anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il