Analysis of interatomic Contacts of Structural Units in PDB entry:
4X96

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4X96 entry

There are 4 chains in PDB entry 4X96 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	THR 22	GLY 396
A	THR 22	GLY 396
B	THR 22	GLY 396
C	THR 22	PRO 143

There are 68 helices in PDB entry 4X96. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	64	67	Right-handed 310
Helix 2	AA2	D	68	80	Right-handed alpha
Helix 3	AA3	D	106	111	Right-handed alpha
Helix 4	AA4	D	121	132	Right-handed alpha
Helix 5	AA5	D	149	152	Right-handed 310
Helix 6	AA6	D	153	172	Right-handed alpha
Helix 7	AA7	D	182	194	Right-handed alpha
Helix 8	AA8	D	195	202	Right-handed alpha
Helix 9	AA9	D	218	225	Right-handed alpha
Helix 10	AB1	D	235	244	Right-handed alpha
Helix 11	AB2	D	247	252	Right-handed alpha
Helix 12	AB3	D	277	285	Right-handed alpha
Helix 13	AB4	D	287	299	Right-handed alpha
Helix 14	AB5	D	349	353	Right-handed 310
Helix 15	AB6	D	354	359	Right-handed alpha
Helix 16	AB7	D	378	383	Right-handed alpha
Helix 17	AB8	D	383	396	Right-handed alpha
Helix 18	AB9	A	64	67	Right-handed 310
Helix 19	AC1	A	68	80	Right-handed alpha
Helix 20	AC2	A	106	111	Right-handed alpha
Helix 21	AC3	A	121	132	Right-handed alpha
Helix 22	AC4	A	149	152	Right-handed 310
Helix 23	AC5	A	153	172	Right-handed alpha
Helix 24	AC6	A	182	194	Right-handed alpha
Helix 25	AC7	A	195	202	Right-handed alpha
Helix 26	AC8	A	218	225	Right-handed alpha
Helix 27	AC9	A	235	244	Right-handed alpha
Helix 28	AD1	A	247	252	Right-handed alpha
Helix 29	AD2	A	277	285	Right-handed alpha
Helix 30	AD3	A	287	299	Right-handed alpha
Helix 31	AD4	A	349	353	Right-handed 310
Helix 32	AD5	A	354	359	Right-handed alpha
Helix 33	AD6	A	378	383	Right-handed alpha
Helix 34	AD7	A	383	396	Right-handed alpha
Helix 35	AD8	B	64	67	Right-handed 310
Helix 36	AD9	B	68	80	Right-handed alpha
Helix 37	AE1	B	106	111	Right-handed alpha
Helix 38	AE2	B	121	132	Right-handed alpha
Helix 39	AE3	B	149	152	Right-handed 310
Helix 40	AE4	B	153	172	Right-handed alpha
Helix 41	AE5	B	182	194	Right-handed alpha
Helix 42	AE6	B	195	202	Right-handed alpha
Helix 43	AE7	B	218	225	Right-handed alpha
Helix 44	AE8	B	235	244	Right-handed alpha
Helix 45	AE9	B	247	252	Right-handed alpha
Helix 46	AF1	B	277	285	Right-handed alpha
Helix 47	AF2	B	287	299	Right-handed alpha
Helix 48	AF3	B	349	353	Right-handed 310
Helix 49	AF4	B	354	359	Right-handed alpha
Helix 50	AF5	B	378	383	Right-handed alpha
Helix 51	AF6	B	383	396	Right-handed alpha
Helix 52	AF7	C	64	67	Right-handed 310
Helix 53	AF8	C	68	80	Right-handed alpha
Helix 54	AF9	C	106	111	Right-handed alpha
Helix 55	AG1	C	121	132	Right-handed alpha
Helix 56	AG2	C	149	152	Right-handed 310
Helix 57	AG3	C	153	172	Right-handed alpha
Helix 58	AG4	C	182	194	Right-handed alpha
Helix 59	AG5	C	195	202	Right-handed alpha
Helix 60	AG6	C	218	225	Right-handed alpha
Helix 61	AG7	C	235	244	Right-handed alpha
Helix 62	AG8	C	247	252	Right-handed alpha
Helix 63	AG9	C	277	285	Right-handed alpha
Helix 64	AH1	C	287	299	Right-handed alpha
Helix 65	AH2	C	349	353	Right-handed 310
Helix 66	AH3	C	354	359	Right-handed alpha
Helix 67	AH4	C	378	383	Right-handed alpha
Helix 68	AH5	C	383	396	Right-handed alpha

There are 16 sheets in PDB entry 4X96. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	141	first strand
Strand 2	D	25	28	parallel
Strand 3	D	175	180	parallel
Strand 4	D	203	209	parallel
Strand 5	D	311	313	parallel
Strand 6	D	367	369	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	61	first strand
Strand 2	D	36	40	anti-parallel
Strand 3	D	96	99	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	274	first strand
Strand 2	D	264	267	anti-parallel
Strand 3	D	319	326	parallel
Strand 4	D	338	344	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	317	first strand
Strand 2	D	372	373	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	141	first strand
Strand 2	A	25	28	parallel
Strand 3	A	175	180	parallel
Strand 4	A	203	209	parallel
Strand 5	A	311	313	parallel
Strand 6	A	367	369	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	61	first strand
Strand 2	A	36	40	anti-parallel
Strand 3	A	96	99	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	274	first strand
Strand 2	A	264	267	anti-parallel
Strand 3	A	319	326	parallel
Strand 4	A	338	344	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	317	first strand
Strand 2	A	372	373	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	141	first strand
Strand 2	B	25	28	parallel
Strand 3	B	175	180	parallel
Strand 4	B	203	209	parallel
Strand 5	B	311	313	parallel
Strand 6	B	367	369	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	61	first strand
Strand 2	B	36	40	anti-parallel
Strand 3	B	96	99	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	274	first strand
Strand 2	B	264	267	anti-parallel
Strand 3	B	319	326	parallel
Strand 4	B	338	344	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	317	first strand
Strand 2	B	372	373	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	141	first strand
Strand 2	C	25	28	parallel
Strand 3	C	175	180	parallel
Strand 4	C	203	209	parallel
Strand 5	C	311	313	parallel
Strand 6	C	367	369	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	61	first strand
Strand 2	C	36	40	anti-parallel
Strand 3	C	96	99	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	274	first strand
Strand 2	C	264	267	anti-parallel
Strand 3	C	319	326	parallel
Strand 4	C	338	344	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	316	317	first strand
Strand 2	C	372	373	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4X96

Analysis of interatomic Contacts of Structural Units in PDB entry:
4X96