Analysis of interatomic Contacts of Structural Units in PDB entry:
4XDC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4XDC entry

There are 2 chains in PDB entry 4XDC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1GLN 581
B
LYS 2HIS 579
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 4XDC. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
18 26Right-handed alpha
Helix 2
AA2
A
76 92Right-handed alpha
Helix 3
AA3
A
107 117Right-handed alpha
Helix 4
AA4
A
128 131Right-handed 310
Helix 5
AA5
A
145 147Right-handed 310
Helix 6
AA6
A
151 162Right-handed alpha
Helix 7
AA7
A
179 183Right-handed 310
Helix 8
AA8
A
184 188Right-handed 310
Helix 9
AA9
A
194 199Right-handed alpha
Helix 10
AB1
A
210 220Right-handed alpha
Helix 11
AB2
A
231 242Right-handed 310
Helix 12
AB3
A
249 260Right-handed alpha
Helix 13
AB4
A
268 290Right-handed alpha
Helix 14
AB5
A
300 311Right-handed alpha
Helix 15
AB6
A
312 318Right-handed 310
Helix 16
AB7
A
323 333Right-handed alpha
Helix 17
AB8
A
334 339Right-handed alpha
Helix 18
AB9
A
343 345Right-handed 310
Helix 19
AC1
A
356 363Right-handed alpha
Helix 20
AC2
A
381 391Right-handed alpha
Helix 21
AC3
A
394 398Right-handed 310
Helix 22
AC4
A
404 408Right-handed 310
Helix 23
AC5
A
411 416Right-handed alpha
Helix 24
AC6
A
417 419Right-handed 310
Helix 25
AC7
A
421 437Right-handed alpha
Helix 26
AC8
A
445 449Right-handed 310
Helix 27
AC9
A
473 483Right-handed alpha
Helix 28
AD1
A
484 488Right-handed 310
Helix 29
AD2
A
502 506Right-handed 310
Helix 30
AD3
A
513 520Right-handed alpha
Helix 31
AD4
A
521 536Right-handed alpha
Helix 32
AD5
A
541 544Right-handed 310
Helix 33
AD6
A
545 555Right-handed alpha
Helix 34
AD7
A
561 568Right-handed alpha
Helix 35
AD8
B
18 26Right-handed alpha
Helix 36
AD9
B
62 64Right-handed 310
Helix 37
AE1
B
76 92Right-handed alpha
Helix 38
AE2
B
107 117Right-handed alpha
Helix 39
AE3
B
128 131Right-handed 310
Helix 40
AE4
B
151 162Right-handed alpha
Helix 41
AE5
B
179 183Right-handed 310
Helix 42
AE6
B
184 188Right-handed 310
Helix 43
AE7
B
194 200Right-handed alpha
Helix 44
AE8
B
210 220Right-handed alpha
Helix 45
AE9
B
231 242Right-handed 310
Helix 46
AF1
B
249 260Right-handed alpha
Helix 47
AF2
B
268 289Right-handed alpha
Helix 48
AF3
B
300 311Right-handed alpha
Helix 49
AF4
B
312 318Right-handed 310
Helix 50
AF5
B
323 333Right-handed alpha
Helix 51
AF6
B
334 339Right-handed alpha
Helix 52
AF7
B
343 345Right-handed 310
Helix 53
AF8
B
356 363Right-handed alpha
Helix 54
AF9
B
381 391Right-handed alpha
Helix 55
AG1
B
394 398Right-handed 310
Helix 56
AG2
B
404 408Right-handed 310
Helix 57
AG3
B
411 416Right-handed alpha
Helix 58
AG4
B
421 436Right-handed alpha
Helix 59
AG5
B
445 449Right-handed 310
Helix 60
AG6
B
473 483Right-handed alpha
Helix 61
AG7
B
484 488Right-handed 310
Helix 62
AG8
B
502 506Right-handed 310
Helix 63
AG9
B
513 520Right-handed alpha
Helix 64
AH1
B
521 537Right-handed alpha
Helix 65
AH2
B
541 544Right-handed 310
Helix 66
AH3
B
545 555Right-handed alpha
Helix 67
AH4
B
561 568Right-handed alpha
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There are 12 sheets in PDB entry 4XDC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
9 13first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
71 73parallel
Strand 4
A
50 53anti-parallel
Strand 5
A
57 60anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
133 134first strand
Strand 2
A
140 143anti-parallel
Strand 3
A
205 207anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
167 171first strand
Strand 2
A
174 178anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
264 267first strand
Strand 2
A
224 229parallel
Strand 3
A
347 353parallel
Strand 4
A
377 380parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
295 296first strand
Strand 2
A
493 497parallel
Strand 3
A
464 472parallel
Strand 4
A
454 461anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
368 369first strand
Strand 2
A
372 373anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
10 12first strand
Strand 2
B
3 6anti-parallel
Strand 3
B
70 73parallel
Strand 4
B
50 53anti-parallel
Strand 5
B
57 60anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
133 134first strand
Strand 2
B
140 143anti-parallel
Strand 3
B
205 207anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
167 171first strand
Strand 2
B
174 178anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
264 267first strand
Strand 2
B
224 229parallel
Strand 3
B
347 353parallel
Strand 4
B
377 380parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
295 296first strand
Strand 2
B
493 497parallel
Strand 3
B
464 472parallel
Strand 4
B
454 461anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
368 369first strand
Strand 2
B
372 373anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il