Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 4XEF entry
There are 6 chains in PDB entry 4XEF
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
|---|
A
|
MET 870 | HIS 1005 |
B
|
MET 1 | THR 15 |
C
|
MET 1 | ARG 13 |
D
|
ALA 871 | ALA 1004 |
E
|
MET 1 | THR 15 |
F
|
GLU 2 | ARG 13 |
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There are 13
helices in PDB entry 4XEF. Click on helix of interest for
CSU analysis.
Helix
number
| Helix
ID | Chain
ID |
Initial
residue | Terminal
residue |
Helix class |
|---|
| Helix 1 |
AA1 | A
| 878 |
898 | Right-handed alpha |
| Helix 2 |
AA2 | A
| 904 |
928 | Right-handed alpha |
| Helix 3 |
AA3 | A
| 935 |
963 | Right-handed alpha |
| Helix 4 |
AA4 | A
| 968 |
1003 | Right-handed alpha |
| Helix 5 |
AA5 | B
| 2 |
15 | Right-handed alpha |
| Helix 6 |
AA6 | C
| 2 |
11 | Right-handed alpha |
| Helix 7 |
AA7 | D
| 878 |
899 | Right-handed alpha |
| Helix 8 |
AA8 | D
| 904 |
928 | Right-handed alpha |
| Helix 9 |
AA9 | D
| 929 |
931 | Right-handed 310 |
| Helix 10 |
AB1 | D
| 932 |
963 | Right-handed alpha |
| Helix 11 |
AB2 | D
| 968 |
1003 | Right-handed alpha |
| Helix 12 |
AB3 | E
| 2 |
14 | Right-handed alpha |
| Helix 13 |
AB4 | F
| 3 |
12 | Right-handed alpha |
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There are no sheets in PDB entry
4XEF
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il