Analysis of interatomic Contacts of Structural Units in PDB entry:
4XGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4XGM entry

There is 1 chain in PDB entry 4XGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 207LYS 582
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4XGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
212 219Right-handed alpha
Helix 2
AA2
A
226 238Right-handed alpha
Helix 3
AA3
A
243 257Right-handed alpha
Helix 4
AA4
A
259 273Right-handed alpha
Helix 5
AA5
A
278 290Right-handed alpha
Helix 6
AA6
A
294 311Right-handed alpha
Helix 7
AA7
A
316 330Right-handed alpha
Helix 8
AA8
A
361 377Right-handed alpha
Helix 9
AA9
A
387 400Right-handed alpha
Helix 10
AB1
A
410 414Right-handed alpha
Helix 11
AB2
A
423 435Right-handed alpha
Helix 12
AB3
A
447 450Right-handed 310
Helix 13
AB4
A
460 467Right-handed alpha
Helix 14
AB5
A
480 490Right-handed alpha
Helix 15
AB6
A
511 525Right-handed alpha
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There are 3 sheets in PDB entry 4XGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 340first strand
Strand 2
A
575 581anti-parallel
Strand 3
A
555 560anti-parallel
Strand 4
A
550 551anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 472first strand
Strand 2
A
440 445parallel
Strand 3
A
406 409parallel
Strand 4
A
494 496parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 529first strand
Strand 2
A
538 539anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il