Analysis of interatomic Contacts of Structural Units in PDB entry:
4XIV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4XIV entry

There are 2 chains in PDB entry 4XIV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 291THR 540
B
 LYS 289THR 540
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 4XIV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
299 324Right-handed alpha
Helix 2
AA2
A
325 327Right-handed 310
Helix 3
AA3
A
329 355Right-handed alpha
Helix 4
AA4
A
358 363Right-handed alpha
Helix 5
AA5
A
364 376Right-handed alpha
Helix 6
AA6
A
392 413Right-handed alpha
Helix 7
AA7
A
417 425Right-handed alpha
Helix 8
AA8
A
455 466Right-handed alpha
Helix 9
AA9
A
478 484Right-handed alpha
Helix 10
AB1
A
485 488Right-handed 310
Helix 11
AB2
A
506 517Right-handed alpha
Helix 12
AB3
B
302 327Right-handed alpha
Helix 13
AB4
B
332 353Right-handed alpha
Helix 14
AB5
B
358 363Right-handed alpha
Helix 15
AB6
B
365 374Right-handed alpha
Helix 16
AB7
B
393 397Right-handed alpha
Helix 17
AB8
B
399 413Right-handed alpha
Helix 18
AB9
B
417 424Right-handed alpha
Helix 19
AC1
B
455 466Right-handed alpha
Helix 20
AC2
B
470 476Right-handed alpha
Helix 21
AC3
B
478 484Right-handed alpha
Helix 22
AC4
B
485 488Right-handed 310
Helix 23
AC5
B
506 515Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 4XIV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 297first strand
Strand 2
B
297 298anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
390 391anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 385first strand
Strand 2
A
430 439parallel
Strand 3
A
442 449anti-parallel
Strand 4
A
530 538anti-parallel
Strand 5
A
520 526anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 357first strand
Strand 2
B
390 392anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 385first strand
Strand 2
B
431 439parallel
Strand 3
B
442 448anti-parallel
Strand 4
B
530 537anti-parallel
Strand 5
B
520 526anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il