Analysis of interatomic Contacts of Structural Units in PDB entry:
4XVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4XVM entry

There are 3 chains in PDB entry 4XVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 194GLN 859
T
 C 1 A 9
P
 G 1 G 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 4XVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
201 203Right-handed 310
Helix 2
AA2
A
204 218Right-handed alpha
Helix 3
AA3
A
292 312Right-handed alpha
Helix 4
AA4
A
320 333Right-handed alpha
Helix 5
AA5
A
348 357Right-handed alpha
Helix 6
AA6
A
364 373Right-handed alpha
Helix 7
AA7
A
389 418Right-handed alpha
Helix 8
AA8
A
420 439Right-handed alpha
Helix 9
AA9
A
446 473Right-handed alpha
Helix 10
AB1
A
480 490Right-handed alpha
Helix 11
AB2
A
515 522Right-handed alpha
Helix 12
AB3
A
527 546Right-handed alpha
Helix 13
AB4
A
546 553Right-handed alpha
Helix 14
AB5
A
607 609Right-handed 310
Helix 15
AB6
A
626 637Right-handed alpha
Helix 16
AB7
A
638 644Right-handed alpha
Helix 17
AB8
A
652 663Right-handed alpha
Helix 18
AB9
A
665 669Right-handed 310
Helix 19
AC1
A
670 686Right-handed alpha
Helix 20
AC2
A
689 696Right-handed alpha
Helix 21
AC3
A
700 715Right-handed alpha
Helix 22
AC4
A
715 733Right-handed alpha
Helix 23
AC5
A
746 749Right-handed 310
Helix 24
AC6
A
752 789Right-handed alpha
Helix 25
AC7
A
813 827Right-handed alpha
Helix 26
AC8
A
828 831Right-handed 310
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There are 5 sheets in PDB entry 4XVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 199first strand
Strand 2
A
280 284parallel
Strand 3
A
244 252anti-parallel
Strand 4
A
220 227anti-parallel
Strand 5
A
316 317parallel
Strand 6
A
346 347parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
557 558first strand
Strand 2
A
443 445anti-parallel
Strand 3
A
611 612anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
561 563first strand
Strand 2
A
573 575anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
796 801first strand
Strand 2
A
804 810anti-parallel
Strand 3
A
617 624anti-parallel
Strand 4
A
844 849anti-parallel
Strand 5
A
856 857anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
734 736first strand
Strand 2
A
742 744anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il