Analysis of interatomic Contacts of Structural Units in PDB entry:
4XVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4XVP entry

There are 9 chains in PDB entry 4XVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 64
A
 VAL 68LEU 231
B
 SER 2LEU 64
B
 VAL 68LEU 231
C
 SER 2LEU 64
C
 VAL 68LEU 231
D
 HIS 9LYS 166
E
 HIS 9LYS 166
F
 HIS 9LYS 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 4XVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed 310
Helix 2
AA2
A
56 62Right-handed alpha
Helix 3
AA3
A
78 81Right-handed 310
Helix 4
AA4
A
82 88Right-handed alpha
Helix 5
AA5
B
3 8Right-handed alpha
Helix 6
AA6
B
56 62Right-handed alpha
Helix 7
AA7
B
82 88Right-handed alpha
Helix 8
AA8
C
4 9Right-handed 310
Helix 9
AA9
C
56 62Right-handed alpha
Helix 10
AB1
C
78 81Right-handed 310
Helix 11
AB2
C
82 88Right-handed alpha
Helix 12
AB3
D
12 23Right-handed alpha
Helix 13
AB4
D
27 42Right-handed alpha
Helix 14
AB5
D
43 45Right-handed 310
Helix 15
AB6
D
46 54Right-handed alpha
Helix 16
AB7
D
58 73Right-handed alpha
Helix 17
AB8
D
74 76Right-handed 310
Helix 18
AB9
D
77 85Right-handed alpha
Helix 19
AC1
D
89 104Right-handed alpha
Helix 20
AC2
D
105 107Right-handed 310
Helix 21
AC3
D
108 116Right-handed alpha
Helix 22
AC4
D
120 135Right-handed alpha
Helix 23
AC5
D
135 150Right-handed alpha
Helix 24
AC6
D
152 165Right-handed alpha
Helix 25
AC7
E
12 23Right-handed alpha
Helix 26
AC8
E
27 42Right-handed alpha
Helix 27
AC9
E
43 45Right-handed 310
Helix 28
AD1
E
46 54Right-handed alpha
Helix 29
AD2
E
58 73Right-handed alpha
Helix 30
AD3
E
74 76Right-handed 310
Helix 31
AD4
E
77 85Right-handed alpha
Helix 32
AD5
E
89 104Right-handed alpha
Helix 33
AD6
E
105 107Right-handed 310
Helix 34
AD7
E
108 116Right-handed alpha
Helix 35
AD8
E
120 135Right-handed alpha
Helix 36
AD9
E
136 150Right-handed alpha
Helix 37
AE1
E
152 165Right-handed alpha
Helix 38
AE2
F
12 23Right-handed alpha
Helix 39
AE3
F
27 42Right-handed alpha
Helix 40
AE4
F
43 45Right-handed 310
Helix 41
AE5
F
46 54Right-handed alpha
Helix 42
AE6
F
58 73Right-handed alpha
Helix 43
AE7
F
74 76Right-handed 310
Helix 44
AE8
F
77 85Right-handed alpha
Helix 45
AE9
F
89 104Right-handed alpha
Helix 46
AF1
F
105 107Right-handed 310
Helix 47
AF2
F
108 116Right-handed alpha
Helix 48
AF3
F
120 135Right-handed alpha
Helix 49
AF4
F
135 150Right-handed alpha
Helix 50
AF5
F
152 165Right-handed alpha
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There are 3 sheets in PDB entry 4XVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 208first strand
Strand 2
A
217 223anti-parallel
Strand 3
A
41 48anti-parallel
Strand 4
A
25 36anti-parallel
Strand 5
A
11 22anti-parallel
Strand 6
A
118 127parallel
Strand 7
A
105 115anti-parallel
Strand 8
A
92 100anti-parallel
Strand 9
A
176 187anti-parallel
Strand 10
A
160 170anti-parallel
Strand 11
A
149 155anti-parallel
Strand 12
A
199 202anti-parallel
Strand 13
A
225 227anti-parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 208first strand
Strand 2
B
217 223anti-parallel
Strand 3
B
41 48anti-parallel
Strand 4
B
25 36anti-parallel
Strand 5
B
11 22anti-parallel
Strand 6
B
118 127parallel
Strand 7
B
105 115anti-parallel
Strand 8
B
92 100anti-parallel
Strand 9
B
176 187anti-parallel
Strand 10
B
160 170anti-parallel
Strand 11
B
149 155anti-parallel
Strand 12
B
199 202anti-parallel
Strand 13
B
225 227anti-parallel
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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
205 208first strand
Strand 2
C
217 223anti-parallel
Strand 3
C
41 48anti-parallel
Strand 4
C
25 36anti-parallel
Strand 5
C
11 22anti-parallel
Strand 6
C
118 127parallel
Strand 7
C
105 115anti-parallel
Strand 8
C
92 100anti-parallel
Strand 9
C
176 187anti-parallel
Strand 10
C
160 170anti-parallel
Strand 11
C
149 155anti-parallel
Strand 12
C
199 202anti-parallel
Strand 13
C
225 227anti-parallel
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