Analysis of interatomic Contacts of Structural Units in PDB entry:
4XVS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4XVS entry

There are 3 chains in PDB entry 4XVS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
GLN 1CYS 228
L
GLU 3CYS 216
G
VAL 44GLU 493
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4XVS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
H
28 32Right-handed 310
Helix 2
AA2
H
61 65Right-handed 310
Helix 3
AA3
H
87 91Right-handed 310
Helix 4
AA4
H
168 170Right-handed 310
Helix 5
AA5
H
199 201Right-handed 310
Helix 6
AA6
H
213 216Right-handed 310
Helix 7
AA7
L
79 83Right-handed 310
Helix 8
AA8
L
123 129Right-handed alpha
Helix 9
AA9
L
185 189Right-handed alpha
Helix 10
AB1
G
64 73Right-handed alpha
Helix 11
AB2
G
98 116Right-handed alpha
Helix 12
AB3
G
335 350Right-handed alpha
Helix 13
AB4
G
368 373Right-handed alpha
Helix 14
AB5
G
387 391Right-handed 310
Helix 15
AB6
G
476 485Right-handed alpha
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There are 18 sheets in PDB entry 4XVS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 13first strand
Strand 2
H
119 124parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
58 59anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 13first strand
Strand 2
H
119 124parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
114 115anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
101 102first strand
Strand 2
H
107 108anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
132 136first strand
Strand 2
H
147 157anti-parallel
Strand 3
H
188 197anti-parallel
Strand 4
H
175 177anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
143 144first strand
Strand 2
H
147 157anti-parallel
Strand 3
H
188 197anti-parallel
Strand 4
H
181 182anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
163 166first strand
Strand 2
H
206 212anti-parallel
Strand 3
H
217 223anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
7 9first strand
Strand 2
L
21 26anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
12 14first strand
Strand 2
L
102 105parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
12 14first strand
Strand 2
L
102 105parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
97 98anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
116 120first strand
Strand 2
L
131 141anti-parallel
Strand 3
L
175 184anti-parallel
Strand 4
L
161 165anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
155 156first strand
Strand 2
L
147 152anti-parallel
Strand 3
L
193 199anti-parallel
Strand 4
L
207 212anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
46 47first strand
Strand 2
G
487 491anti-parallel
Strand 3
G
223 228anti-parallel
Strand 4
G
242 245anti-parallel
Strand 5
G
84 86anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
74 76first strand
Strand 2
G
53 56parallel
Strand 3
G
216 218anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
91 94first strand
Strand 2
G
236 239anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
199 202first strand
Strand 2
G
120 123anti-parallel
Strand 3
G
432 434anti-parallel
Strand 4
G
423 425anti-parallel
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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
259 261first strand
Strand 2
G
443 456anti-parallel
Strand 3
G
284 298anti-parallel
Strand 4
G
328 334anti-parallel
Strand 5
G
413 421anti-parallel
Strand 6
G
381 385anti-parallel
Strand 7
G
374 378anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
271 273first strand
Strand 2
G
284 298anti-parallel
Strand 3
G
443 456anti-parallel
Strand 4
G
466 471anti-parallel
Strand 5
G
358 361parallel
Strand 6
G
393 395anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il