Analysis of interatomic Contacts of Structural Units in PDB entry:
4Y00


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Y00 entry

There are 8 chains in PDB entry 4Y00 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 103SER 180
B
 THR 103SER 180
C
 THR 103ASN 179
D
 THR 103ASN 179
E
 T 2 T 9
F
 G 1 T 9
G
 G 4 C 7
H
 C 7 T 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 4Y00. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
116 125Right-handed alpha
Helix 2
AA2
A
154 163Right-handed alpha
Helix 3
AA3
B
116 125Right-handed alpha
Helix 4
AA4
B
154 164Right-handed alpha
Helix 5
AA5
C
116 125Right-handed alpha
Helix 6
AA6
C
154 162Right-handed alpha
Helix 7
AA7
D
116 125Right-handed alpha
Helix 8
AA8
D
154 163Right-handed alpha
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There are 4 sheets in PDB entry 4Y00. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 137first strand
Strand 2
A
144 152anti-parallel
Strand 3
A
106 109anti-parallel
Strand 4
A
171 176anti-parallel
Strand 5
A
165 168anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 137first strand
Strand 2
B
144 152anti-parallel
Strand 3
B
105 109anti-parallel
Strand 4
B
171 176anti-parallel
Strand 5
B
166 168anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 137first strand
Strand 2
C
144 152anti-parallel
Strand 3
C
106 109anti-parallel
Strand 4
C
171 176anti-parallel
Strand 5
C
165 168anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
130 137first strand
Strand 2
D
144 152anti-parallel
Strand 3
D
105 109anti-parallel
Strand 4
D
172 176anti-parallel
Strand 5
D
165 167anti-parallel
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