Analysis of interatomic Contacts of Structural Units in PDB entry:
4Y06


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Y06 entry

There are 2 chains in PDB entry 4Y06 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 25GLY 721
B
 GLY 25GLY 721
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 4Y06. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 32Right-handed 310
Helix 2
AA2
A
33 45Right-handed alpha
Helix 3
AA3
A
49 55Right-handed alpha
Helix 4
AA4
A
60 62Right-handed 310
Helix 5
AA5
A
84 95Right-handed alpha
Helix 6
AA6
A
101 106Right-handed alpha
Helix 7
AA7
A
133 145Right-handed alpha
Helix 8
AA8
A
147 168Right-handed alpha
Helix 9
AA9
A
180 183Right-handed 310
Helix 10
AB1
A
203 208Right-handed alpha
Helix 11
AB2
A
210 215Right-handed alpha
Helix 12
AB3
A
281 291Right-handed alpha
Helix 13
AB4
A
291 313Right-handed alpha
Helix 14
AB5
A
314 321Right-handed alpha
Helix 15
AB6
A
321 345Right-handed alpha
Helix 16
AB7
A
346 364Right-handed alpha
Helix 17
AB8
A
365 368Right-handed 310
Helix 18
AB9
A
369 389Right-handed alpha
Helix 19
AC1
A
389 400Right-handed alpha
Helix 20
AC2
A
402 419Right-handed alpha
Helix 21
AC3
A
420 425Right-handed 310
Helix 22
AC4
A
430 432Right-handed 310
Helix 23
AC5
A
433 444Right-handed alpha
Helix 24
AC6
A
445 448Right-handed 310
Helix 25
AC7
A
449 466Right-handed alpha
Helix 26
AC8
A
468 472Right-handed 310
Helix 27
AC9
A
473 481Right-handed alpha
Helix 28
AD1
A
484 497Right-handed alpha
Helix 29
AD2
A
502 512Right-handed alpha
Helix 30
AD3
A
513 520Right-handed alpha
Helix 31
AD4
A
522 567Right-handed alpha
Helix 32
AD5
A
603 609Right-handed alpha
Helix 33
AD6
A
619 628Right-handed alpha
Helix 34
AD7
A
677 684Right-handed 310
Helix 35
AD8
A
687 691Right-handed 310
Helix 36
AD9
A
698 708Right-handed alpha
Helix 37
AE1
A
711 718Right-handed alpha
Helix 38
AE2
B
30 32Right-handed 310
Helix 39
AE3
B
33 45Right-handed alpha
Helix 40
AE4
B
49 55Right-handed alpha
Helix 41
AE5
B
60 62Right-handed 310
Helix 42
AE6
B
84 95Right-handed alpha
Helix 43
AE7
B
101 106Right-handed alpha
Helix 44
AE8
B
111 115Right-handed 310
Helix 45
AE9
B
133 143Right-handed alpha
Helix 46
AF1
B
147 167Right-handed alpha
Helix 47
AF2
B
203 208Right-handed alpha
Helix 48
AF3
B
210 215Right-handed alpha
Helix 49
AF4
B
281 291Right-handed alpha
Helix 50
AF5
B
291 314Right-handed alpha
Helix 51
AF6
B
314 321Right-handed alpha
Helix 52
AF7
B
321 345Right-handed alpha
Helix 53
AF8
B
346 364Right-handed alpha
Helix 54
AF9
B
365 368Right-handed 310
Helix 55
AG1
B
369 389Right-handed alpha
Helix 56
AG2
B
389 400Right-handed alpha
Helix 57
AG3
B
402 419Right-handed alpha
Helix 58
AG4
B
420 425Right-handed 310
Helix 59
AG5
B
430 432Right-handed 310
Helix 60
AG6
B
433 444Right-handed alpha
Helix 61
AG7
B
445 447Right-handed 310
Helix 62
AG8
B
449 466Right-handed alpha
Helix 63
AG9
B
468 472Right-handed 310
Helix 64
AH1
B
473 481Right-handed alpha
Helix 65
AH2
B
484 496Right-handed alpha
Helix 66
AH3
B
502 512Right-handed alpha
Helix 67
AH4
B
513 520Right-handed alpha
Helix 68
AH5
B
522 567Right-handed alpha
Helix 69
AH6
B
603 609Right-handed alpha
Helix 70
AH7
B
619 628Right-handed alpha
Helix 71
AH8
B
677 684Right-handed 310
Helix 72
AH9
B
687 691Right-handed 310
Helix 73
AI1
B
698 708Right-handed alpha
Helix 74
AI2
B
711 718Right-handed alpha
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There are 9 sheets in PDB entry 4Y06. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
71 74anti-parallel
Strand 3
A
80 83anti-parallel
Strand 4
A
226 232anti-parallel
Strand 5
A
195 201anti-parallel
Strand 6
A
116 117anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
195 201anti-parallel
Strand 3
A
226 232anti-parallel
Strand 4
A
246 247anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 132first strand
Strand 2
A
184 193anti-parallel
Strand 3
A
172 179anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 585first strand
Strand 2
A
266 271anti-parallel
Strand 3
A
660 662anti-parallel
Strand 4
A
668 675anti-parallel
Strand 5
A
693 697anti-parallel
Strand 6
A
643 648anti-parallel
Strand 7
A
600 602anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 597first strand
Strand 2
B
595 597anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
71 74anti-parallel
Strand 3
B
80 83anti-parallel
Strand 4
B
226 232anti-parallel
Strand 5
B
195 201anti-parallel
Strand 6
B
116 117anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
195 201anti-parallel
Strand 3
B
226 232anti-parallel
Strand 4
B
246 247anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 132first strand
Strand 2
B
184 193anti-parallel
Strand 3
B
172 179anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
580 585first strand
Strand 2
B
266 271anti-parallel
Strand 3
B
660 662anti-parallel
Strand 4
B
668 675anti-parallel
Strand 5
B
693 697anti-parallel
Strand 6
B
643 648anti-parallel
Strand 7
B
600 602anti-parallel
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