Analysis of interatomic Contacts of Structural Units in PDB entry:
4Y0X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Y0X entry

There is 1 chain in PDB entry 4Y0X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 83THR 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4Y0X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 94Right-handed 310
Helix 2
AA2
A
100 104Right-handed 310
Helix 3
AA3
A
188 200Right-handed alpha
Helix 4
AA4
A
201 205Right-handed 310
Helix 5
AA5
A
249 270Right-handed alpha
Helix 6
AA6
A
278 280Right-handed 310
Helix 7
AA7
A
293 297Right-handed 310
Helix 8
AA8
A
316 321Right-handed alpha
Helix 9
AA9
A
323 340Right-handed alpha
Helix 10
AB1
A
357 363Right-handed alpha
Helix 11
AB2
A
363 374Right-handed alpha
Helix 12
AB3
A
377 381Right-handed 310
Helix 13
AB4
A
384 404Right-handed alpha
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There are 5 sheets in PDB entry 4Y0X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
134 136anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
151 160anti-parallel
Strand 3
A
163 170anti-parallel
Strand 4
A
177 182anti-parallel
Strand 5
A
226 233anti-parallel
Strand 6
A
213 220anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
282 284anti-parallel
Strand 3
A
289 291anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 273first strand
Strand 2
A
298 299anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 345first strand
Strand 2
A
348 349anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il