Analysis of interatomic Contacts of Structural Units in PDB entry:
4Y28

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4Y28 entry

There are 2 chains in PDB entry 4Y28 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 17	GLY 758
B	ALA 2	LEU 525

There are137 helices in PDB entry 4Y28. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	60	Right-handed alpha
Helix 2	AA2	A	63	68	Right-handed alpha
Helix 3	AA3	A	70	100	Right-handed alpha
Helix 4	AA4	A	105	110	Right-handed alpha
Helix 5	AA5	A	128	133	Right-handed 310
Helix 6	AA6	A	148	156	Right-handed alpha
Helix 7	AA7	A	160	185	Right-handed alpha
Helix 8	AA8	A	192	198	Right-handed alpha
Helix 9	AA9	A	198	209	Right-handed alpha
Helix 10	AB1	A	211	223	Right-handed alpha
Helix 11	AB2	A	225	236	Right-handed alpha
Helix 12	AB3	A	245	251	Right-handed alpha
Helix 13	AB4	A	253	258	Right-handed alpha
Helix 14	AB5	A	259	264	Right-handed 310
Helix 15	AB6	A	276	280	Right-handed 310
Helix 16	AB7	A	295	314	Right-handed alpha
Helix 17	AB8	A	326	333	Right-handed alpha
Helix 18	AB9	A	345	351	Right-handed alpha
Helix 19	AC1	A	353	379	Right-handed alpha
Helix 20	AC2	A	388	421	Right-handed alpha
Helix 21	AC3	A	431	436	Right-handed alpha
Helix 22	AC4	A	438	470	Right-handed alpha
Helix 23	AC5	A	472	476	Right-handed 310
Helix 24	AC6	A	486	498	Right-handed alpha
Helix 25	AC7	A	512	516	Right-handed 310
Helix 26	AC8	A	535	562	Right-handed alpha
Helix 27	AC9	A	571	576	Right-handed alpha
Helix 28	AD1	A	593	624	Right-handed alpha
Helix 29	AD2	A	641	646	Right-handed alpha
Helix 30	AD3	A	648	655	Right-handed alpha
Helix 31	AD4	A	656	661	Right-handed alpha
Helix 32	AD5	A	661	666	Right-handed alpha
Helix 33	AD6	A	672	694	Right-handed alpha
Helix 34	AD7	A	696	714	Right-handed alpha
Helix 35	AD8	A	726	758	Right-handed alpha
Helix 36	AD9	B	9	14	Right-handed alpha
Helix 37	AE1	B	18	27	Right-handed alpha
Helix 38	AE2	B	30	34	Right-handed 310
Helix 39	AE3	B	38	72	Right-handed alpha
Helix 40	AE4	B	74	80	Right-handed alpha
Helix 41	AE5	B	97	105	Right-handed alpha
Helix 42	AE6	B	119	128	Right-handed alpha
Helix 43	AE7	B	131	156	Right-handed alpha
Helix 44	AE8	B	164	169	Right-handed alpha
Helix 45	AE9	B	170	181	Right-handed alpha
Helix 46	AF1	B	183	197	Right-handed alpha
Helix 47	AF2	B	197	202	Right-handed alpha
Helix 48	AF3	B	208	212	Right-handed 310
Helix 49	AF4	B	222	228	Right-handed alpha
Helix 50	AF5	B	229	235	Right-handed 310
Helix 51	AF6	B	269	288	Right-handed alpha
Helix 52	AF7	B	300	308	Right-handed alpha
Helix 53	AF8	B	321	328	Right-handed alpha
Helix 54	AF9	B	329	353	Right-handed alpha
Helix 55	AG1	B	364	397	Right-handed alpha
Helix 56	AG2	B	400	404	Right-handed 310
Helix 57	AG3	B	406	414	Right-handed alpha
Helix 58	AG4	B	414	446	Right-handed alpha
Helix 59	AG5	B	448	452	Right-handed 310
Helix 60	AG6	B	457	468	Right-handed alpha
Helix 61	AG7	B	483	489	Right-handed alpha
Helix 62	AG8	B	493	502	Right-handed alpha
Helix 63	AG9	B	513	540	Right-handed alpha
Helix 64	AH1	B	562	566	Right-handed 310
Helix 65	AH2	B	571	603	Right-handed alpha
Helix 66	AH3	B	605	613	Right-handed alpha
Helix 67	AH4	B	615	623	Right-handed alpha
Helix 68	AH5	B	623	628	Right-handed alpha
Helix 69	AH6	B	643	666	Right-handed alpha
Helix 70	AH7	B	667	684	Right-handed alpha
Helix 71	AH8	B	701	733	Right-handed alpha
Helix 72	AH9	I	8	14	Right-handed alpha
Helix 73	AI1	I	14	30	Right-handed alpha
Helix 74	AI2	J	3	9	Right-handed alpha
Helix 75	AI3	J	12	33	Right-handed alpha
Helix 76	AI4	F	88	107	Right-handed alpha
Helix 77	AI5	F	113	136	Right-handed alpha
Helix 78	AI6	F	153	157	Right-handed 310
Helix 79	AI7	F	160	187	Right-handed alpha
Helix 80	AI8	F	192	197	Right-handed alpha
Helix 81	AI9	F	199	207	Right-handed alpha
Helix 82	AJ1	F	208	215	Right-handed 310
Helix 83	AJ2	F	216	221	Right-handed alpha
Helix 84	AJ3	G	61	78	Right-handed alpha
Helix 85	AJ4	G	79	91	Right-handed alpha
Helix 86	AJ5	G	108	113	Right-handed alpha
Helix 87	AJ6	G	120	145	Right-handed alpha
Helix 88	AJ7	L	61	63	Right-handed 310
Helix 89	AJ8	L	71	76	Right-handed alpha
Helix 90	AJ9	L	76	85	Right-handed alpha
Helix 91	AK1	L	94	118	Right-handed alpha
Helix 92	AK2	L	126	128	Right-handed 310
Helix 93	AK3	L	129	153	Right-handed alpha
Helix 94	AK4	L	178	207	Right-handed alpha
Helix 95	AK5	C	15	21	Right-handed alpha
Helix 96	AK6	C	54	58	Right-handed 310
Helix 97	AK7	D	92	98	Right-handed alpha
Helix 98	AK8	D	135	147	Right-handed alpha
Helix 99	AK9	D	197	202	Right-handed 310
Helix 100	AL1	E	121	123	Right-handed 310
Helix 101	AL2	H	56	58	Right-handed 310
Helix 102	AL3	H	59	64	Right-handed alpha
Helix 103	AL4	H	81	90	Right-handed alpha
Helix 104	AL5	H	91	96	Right-handed 310
Helix 105	AL6	H	97	114	Right-handed alpha
Helix 106	AL7	K	62	82	Right-handed alpha
Helix 107	AL8	K	119	142	Right-handed alpha
Helix 108	AL9	2	95	128	Right-handed alpha
Helix 109	AM1	2	149	165	Right-handed alpha
Helix 110	AM2	2	166	173	Right-handed alpha
Helix 111	AM3	2	197	202	Right-handed alpha
Helix 112	AM4	2	212	243	Right-handed alpha
Helix 113	AM5	2	245	256	Right-handed alpha
Helix 114	AM6	2	261	265	Right-handed 310
Helix 115	AM7	4	84	119	Right-handed alpha
Helix 116	AM8	4	125	129	Right-handed 310
Helix 117	AM9	4	137	162	Right-handed alpha
Helix 118	AN1	4	186	190	Right-handed 310
Helix 119	AN2	4	199	226	Right-handed alpha
Helix 120	AN3	4	228	239	Right-handed alpha
Helix 121	AN4	4	240	243	Right-handed 310
Helix 122	AN5	4	244	249	Right-handed alpha
Helix 123	AN6	1	69	100	Right-handed alpha
Helix 124	AN7	1	104	114	Right-handed alpha
Helix 125	AN8	1	130	150	Right-handed alpha
Helix 126	AN9	1	153	159	Right-handed alpha
Helix 127	AO1	1	169	172	Right-handed 310
Helix 128	AO2	1	173	203	Right-handed alpha
Helix 129	AO3	1	209	220	Right-handed alpha
Helix 130	AO4	1	225	231	Right-handed alpha
Helix 131	AO5	3	94	126	Right-handed alpha
Helix 132	AO6	3	135	141	Right-handed alpha
Helix 133	AO7	3	153	178	Right-handed alpha
Helix 134	AO8	3	217	219	Right-handed 310
Helix 135	AO9	3	220	249	Right-handed alpha
Helix 136	AP1	3	251	262	Right-handed alpha
Helix 137	AP2	3	267	272	Right-handed alpha

There are 13 sheets in PDB entry 4Y28. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	190	191	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	135	first strand
Strand 2	A	141	142	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	523	first strand
Strand 2	A	526	529	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	626	628	first strand
Strand 2	A	634	636	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	113	115	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	262	first strand
Strand 2	B	267	268	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	84	first strand
Strand 2	F	139	140	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	58	59	first strand
Strand 2	L	69	70	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	4	8	anti-parallel
Strand 3	D	187	188	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	132	first strand
Strand 2	D	101	107	anti-parallel
Strand 3	D	153	157	anti-parallel
Strand 4	D	165	168	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	114	first strand
Strand 2	D	120	122	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	118	first strand
Strand 2	E	104	106	anti-parallel
Strand 3	E	87	92	anti-parallel
Strand 4	E	73	76	anti-parallel
Strand 5	E	125	128	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4Y28

Analysis of interatomic Contacts of Structural Units in PDB entry:
4Y28