Analysis of interatomic Contacts of Structural Units in PDB entry:
4Y2W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Y2W entry

There are 2 chains in PDB entry 4Y2W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1LYS 388
B
 VAL 1LYS 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 4Y2W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 29Right-handed alpha
Helix 2
AA2
A
39 46Right-handed alpha
Helix 3
AA3
A
47 59Right-handed alpha
Helix 4
AA4
A
67 77Right-handed alpha
Helix 5
AA5
A
90 92Right-handed 310
Helix 6
AA6
A
93 100Right-handed alpha
Helix 7
AA7
A
108 122Right-handed alpha
Helix 8
AA8
A
143 156Right-handed alpha
Helix 9
AA9
A
176 196Right-handed alpha
Helix 10
AB1
A
209 215Right-handed alpha
Helix 11
AB2
A
216 220Right-handed 310
Helix 12
AB3
A
226 231Right-handed 310
Helix 13
AB4
A
267 271Right-handed 310
Helix 14
AB5
A
286 290Right-handed 310
Helix 15
AB6
A
292 296Right-handed 310
Helix 16
AB7
A
347 355Right-handed alpha
Helix 17
AB8
A
358 366Right-handed alpha
Helix 18
AB9
B
15 29Right-handed alpha
Helix 19
AC1
B
39 46Right-handed alpha
Helix 20
AC2
B
47 59Right-handed alpha
Helix 21
AC3
B
67 77Right-handed alpha
Helix 22
AC4
B
90 92Right-handed 310
Helix 23
AC5
B
93 100Right-handed alpha
Helix 24
AC6
B
108 122Right-handed alpha
Helix 25
AC7
B
143 156Right-handed alpha
Helix 26
AC8
B
176 197Right-handed alpha
Helix 27
AC9
B
208 215Right-handed alpha
Helix 28
AD1
B
216 219Right-handed 310
Helix 29
AD2
B
226 231Right-handed 310
Helix 30
AD3
B
267 271Right-handed 310
Helix 31
AD4
B
286 290Right-handed 310
Helix 32
AD5
B
292 296Right-handed 310
Helix 33
AD6
B
347 355Right-handed alpha
Helix 34
AD7
B
358 366Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4Y2W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 346first strand
Strand 2
A
334 340anti-parallel
Strand 3
A
248 253anti-parallel
Strand 4
A
10 14anti-parallel
Strand 5
A
372 376parallel
Strand 6
A
379 384anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
62 65parallel
Strand 3
A
83 85parallel
Strand 4
A
103 106parallel
Strand 5
A
126 131parallel
Strand 6
A
160 166parallel
Strand 7
A
203 208parallel
Strand 8
A
222 224parallel
Strand 9
A
34 38parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 260first strand
Strand 2
A
278 283anti-parallel
Strand 3
A
319 322anti-parallel
Strand 4
A
306 311anti-parallel
Strand 5
A
300 303anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
272 273anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 260first strand
Strand 2
B
278 283anti-parallel
Strand 3
B
319 322anti-parallel
Strand 4
B
306 311anti-parallel
Strand 5
B
300 303anti-parallel
Strand 6
B
334 340anti-parallel
Strand 7
B
345 346anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 260first strand
Strand 2
B
278 283anti-parallel
Strand 3
B
319 322anti-parallel
Strand 4
B
306 311anti-parallel
Strand 5
B
300 303anti-parallel
Strand 6
B
334 340anti-parallel
Strand 7
B
248 253anti-parallel
Strand 8
B
10 14anti-parallel
Strand 9
B
372 376parallel
Strand 10
B
379 384anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 38first strand
Strand 2
B
62 65parallel
Strand 3
B
83 85parallel
Strand 4
B
103 106parallel
Strand 5
B
126 131parallel
Strand 6
B
160 166parallel
Strand 7
B
203 205parallel
Strand 8
B
222 223parallel
Strand 9
B
34 38parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 266first strand
Strand 2
B
272 273anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il