Analysis of interatomic Contacts of Structural Units in PDB entry:
4Y5Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Y5Q entry

There is 1 chain in PDB entry 4Y5Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -3ASN 537
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 4Y5Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 75Right-handed alpha
Helix 2
AA2
A
109 113Right-handed alpha
Helix 3
AA3
A
116 129Right-handed alpha
Helix 4
AA4
A
159 168Right-handed alpha
Helix 5
AA5
A
171 192Right-handed alpha
Helix 6
AA6
A
200 202Right-handed 310
Helix 7
AA7
A
237 242Right-handed 310
Helix 8
AA8
A
243 249Right-handed 310
Helix 9
AA9
A
252 270Right-handed alpha
Helix 10
AB1
A
278 289Right-handed alpha
Helix 11
AB2
A
295 299Right-handed 310
Helix 12
AB3
A
302 313Right-handed alpha
Helix 13
AB4
A
322 328Right-handed alpha
Helix 14
AB5
A
329 335Right-handed alpha
Helix 15
AB6
A
341 343Right-handed 310
Helix 16
AB7
A
344 361Right-handed alpha
Helix 17
AB8
A
362 377Right-handed alpha
Helix 18
AB9
A
378 393Right-handed alpha
Helix 19
AC1
A
401 417Right-handed alpha
Helix 20
AC2
A
430 443Right-handed alpha
Helix 21
AC3
A
451 460Right-handed alpha
Helix 22
AC4
A
461 466Right-handed 310
Helix 23
AC5
A
467 479Right-handed alpha
Helix 24
AC6
A
487 496Right-handed alpha
Helix 25
AC7
A
524 536Right-handed alpha
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There are 3 sheets in PDB entry 4Y5Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 83first strand
Strand 2
A
89 95anti-parallel
Strand 3
A
101 108anti-parallel
Strand 4
A
147 153anti-parallel
Strand 5
A
138 143anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 206first strand
Strand 2
A
215 217anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 486first strand
Strand 2
A
522 523anti-parallel
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