Analysis of interatomic Contacts of Structural Units in PDB entry:
4Y5W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4Y5W entry

There are 12 chains in PDB entry 4Y5W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 129	GLY 640
A	VAL 642	GLU 651
B	LYS 129	GLY 640
B	VAL 642	GLU 651
D	LYS 129	GLY 640
D	VAL 642	GLU 651
E	A 1	A 22
F	T 1	T 22
M	A 1	A 22
N	T 1	T 22
C	LYS 129	GLY 640
C	VAL 642	GLU 651

There are 74 helices in PDB entry 4Y5W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	129	151	Right-handed alpha
Helix 2	AA2	A	181	212	Right-handed alpha
Helix 3	AA3	A	221	242	Right-handed alpha
Helix 4	AA4	A	254	272	Right-handed alpha
Helix 5	AA5	A	297	300	Right-handed 310
Helix 6	AA6	A	351	354	Right-handed 310
Helix 7	AA7	A	378	382	Right-handed 310
Helix 8	AA8	A	415	417	Right-handed 310
Helix 9	AA9	A	418	431	Right-handed alpha
Helix 10	AB1	A	448	464	Right-handed alpha
Helix 11	AB2	A	470	483	Right-handed alpha
Helix 12	AB3	A	488	494	Right-handed alpha
Helix 13	AB4	A	499	504	Right-handed alpha
Helix 14	AB5	A	513	528	Right-handed alpha
Helix 15	AB6	A	529	535	Right-handed alpha
Helix 16	AB7	A	543	552	Right-handed alpha
Helix 17	AB8	A	594	600	Right-handed alpha
Helix 18	AB9	A	601	609	Right-handed alpha
Helix 19	AC1	A	620	625	Right-handed alpha
Helix 20	AC2	B	131	151	Right-handed alpha
Helix 21	AC3	B	181	214	Right-handed alpha
Helix 22	AC4	B	221	242	Right-handed alpha
Helix 23	AC5	B	255	272	Right-handed alpha
Helix 24	AC6	B	297	302	Right-handed alpha
Helix 25	AC7	B	318	322	Right-handed alpha
Helix 26	AC8	B	378	382	Right-handed 310
Helix 27	AC9	B	415	431	Right-handed alpha
Helix 28	AD1	B	448	464	Right-handed alpha
Helix 29	AD2	B	470	483	Right-handed alpha
Helix 30	AD3	B	488	494	Right-handed alpha
Helix 31	AD4	B	499	504	Right-handed alpha
Helix 32	AD5	B	513	528	Right-handed alpha
Helix 33	AD6	B	529	535	Right-handed alpha
Helix 34	AD7	B	543	553	Right-handed alpha
Helix 35	AD8	B	594	600	Right-handed alpha
Helix 36	AD9	B	601	609	Right-handed alpha
Helix 37	AE1	B	621	625	Right-handed alpha
Helix 38	AE2	D	131	151	Right-handed alpha
Helix 39	AE3	D	181	215	Right-handed alpha
Helix 40	AE4	D	221	243	Right-handed alpha
Helix 41	AE5	D	255	272	Right-handed alpha
Helix 42	AE6	D	297	300	Right-handed 310
Helix 43	AE7	D	317	322	Right-handed alpha
Helix 44	AE8	D	378	382	Right-handed 310
Helix 45	AE9	D	415	417	Right-handed 310
Helix 46	AF1	D	418	431	Right-handed alpha
Helix 47	AF2	D	448	464	Right-handed alpha
Helix 48	AF3	D	470	483	Right-handed alpha
Helix 49	AF4	D	488	494	Right-handed alpha
Helix 50	AF5	D	499	504	Right-handed alpha
Helix 51	AF6	D	513	529	Right-handed alpha
Helix 52	AF7	D	529	535	Right-handed alpha
Helix 53	AF8	D	543	553	Right-handed alpha
Helix 54	AF9	D	593	600	Right-handed alpha
Helix 55	AG1	D	601	609	Right-handed alpha
Helix 56	AG2	D	621	625	Right-handed alpha
Helix 57	AG3	C	131	151	Right-handed alpha
Helix 58	AG4	C	181	212	Right-handed alpha
Helix 59	AG5	C	221	242	Right-handed alpha
Helix 60	AG6	C	254	272	Right-handed alpha
Helix 61	AG7	C	297	299	Right-handed 310
Helix 62	AG8	C	317	322	Right-handed alpha
Helix 63	AG9	C	378	381	Right-handed 310
Helix 64	AH1	C	415	417	Right-handed 310
Helix 65	AH2	C	418	431	Right-handed alpha
Helix 66	AH3	C	448	464	Right-handed alpha
Helix 67	AH4	C	470	483	Right-handed alpha
Helix 68	AH5	C	488	494	Right-handed alpha
Helix 69	AH6	C	499	504	Right-handed alpha
Helix 70	AH7	C	513	529	Right-handed alpha
Helix 71	AH8	C	529	535	Right-handed alpha
Helix 72	AH9	C	543	553	Right-handed alpha
Helix 73	AI1	C	593	600	Right-handed alpha
Helix 74	AI2	C	601	609	Right-handed alpha

There are 28 sheets in PDB entry 4Y5W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	277	first strand
Strand 2	A	288	295	anti-parallel
Strand 3	A	355	365	anti-parallel
Strand 4	A	340	341	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	277	first strand
Strand 2	A	288	295	anti-parallel
Strand 3	A	355	365	anti-parallel
Strand 4	A	348	350	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	411	413	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	346	first strand
Strand 2	A	310	317	anti-parallel
Strand 3	A	384	393	anti-parallel
Strand 4	A	400	406	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	447	first strand
Strand 2	A	496	498	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	588	first strand
Strand 2	A	570	577	anti-parallel
Strand 3	A	592	593	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	588	first strand
Strand 2	A	570	577	anti-parallel
Strand 3	A	558	563	anti-parallel
Strand 4	A	614	615	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	645	650	first strand
Strand 2	C	644	649	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	288	295	anti-parallel
Strand 3	B	355	365	anti-parallel
Strand 4	B	340	341	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	288	295	anti-parallel
Strand 3	B	355	365	anti-parallel
Strand 4	B	348	350	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	284	first strand
Strand 2	B	411	413	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	346	first strand
Strand 2	B	310	317	anti-parallel
Strand 3	B	384	391	anti-parallel
Strand 4	B	402	406	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	447	first strand
Strand 2	B	496	498	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	588	first strand
Strand 2	B	570	577	anti-parallel
Strand 3	B	592	593	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	588	first strand
Strand 2	B	570	577	anti-parallel
Strand 3	B	558	563	anti-parallel
Strand 4	B	614	615	parallel
Strand 5	B	619	620	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	645	650	first strand
Strand 2	D	644	649	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	277	first strand
Strand 2	D	289	295	anti-parallel
Strand 3	D	355	367	anti-parallel
Strand 4	D	339	341	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	277	first strand
Strand 2	D	289	295	anti-parallel
Strand 3	D	355	367	anti-parallel
Strand 4	D	348	350	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	284	first strand
Strand 2	D	411	413	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	346	first strand
Strand 2	D	310	316	anti-parallel
Strand 3	D	385	392	anti-parallel
Strand 4	D	401	406	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	445	447	first strand
Strand 2	D	496	498	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	586	588	first strand
Strand 2	D	571	576	anti-parallel
Strand 3	D	558	563	anti-parallel
Strand 4	D	614	615	parallel
Strand 5	D	619	620	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	277	first strand
Strand 2	C	289	295	anti-parallel
Strand 3	C	355	367	anti-parallel
Strand 4	C	339	341	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	277	first strand
Strand 2	C	289	295	anti-parallel
Strand 3	C	355	367	anti-parallel
Strand 4	C	348	350	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	284	first strand
Strand 2	C	410	413	parallel
Strand 3	C	383	392	anti-parallel
Strand 4	C	310	316	anti-parallel
Strand 5	C	344	346	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	284	first strand
Strand 2	C	410	413	parallel
Strand 3	C	383	392	anti-parallel
Strand 4	C	401	406	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	447	first strand
Strand 2	C	496	498	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	586	588	first strand
Strand 2	C	571	576	anti-parallel
Strand 3	C	558	563	anti-parallel
Strand 4	C	614	615	parallel
Strand 5	C	619	620	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4Y5W

Analysis of interatomic Contacts of Structural Units in PDB entry:
4Y5W