Analysis of interatomic Contacts of Structural Units in PDB entry:
4Y66


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Y66 entry

There are 6 chains in PDB entry 4Y66 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 76GLU 203
B
 ALA 79LYS 230
C
 THR 6LEU 202
D
 ALA 8ILE 225
E
 ASP 9GLU 163
F
 ALA 3VAL 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 4Y66. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 109Right-handed alpha
Helix 2
AA2
A
115 144Right-handed alpha
Helix 3
AA3
A
146 181Right-handed alpha
Helix 4
AA4
A
185 194Right-handed alpha
Helix 5
AA5
B
81 114Right-handed alpha
Helix 6
AA6
B
119 145Right-handed alpha
Helix 7
AA7
B
150 186Right-handed alpha
Helix 8
AA8
B
189 198Right-handed alpha
Helix 9
AA9
B
204 215Right-handed alpha
Helix 10
AB1
B
221 229Right-handed alpha
Helix 11
AB2
C
7 23Right-handed alpha
Helix 12
AB3
C
29 33Right-handed 310
Helix 13
AB4
C
34 39Right-handed alpha
Helix 14
AB5
C
44 55Right-handed alpha
Helix 15
AB6
C
74 110Right-handed alpha
Helix 16
AB7
C
115 145Right-handed alpha
Helix 17
AB8
C
146 180Right-handed alpha
Helix 18
AB9
C
185 194Right-handed alpha
Helix 19
AC1
D
9 17Right-handed alpha
Helix 20
AC2
D
24 31Right-handed alpha
Helix 21
AC3
D
38 51Right-handed alpha
Helix 22
AC4
D
70 73Right-handed 310
Helix 23
AC5
D
79 114Right-handed alpha
Helix 24
AC6
D
117 146Right-handed alpha
Helix 25
AC7
D
150 186Right-handed alpha
Helix 26
AC8
D
189 198Right-handed alpha
Helix 27
AC9
D
205 214Right-handed alpha
Helix 28
AD1
E
10 22Right-handed alpha
Helix 29
AD2
E
29 33Right-handed 310
Helix 30
AD3
E
44 55Right-handed alpha
Helix 31
AD4
E
74 112Right-handed alpha
Helix 32
AD5
E
115 145Right-handed alpha
Helix 33
AD6
E
147 163Right-handed alpha
Helix 34
AD7
F
4 19Right-handed alpha
Helix 35
AD8
F
24 32Right-handed alpha
Helix 36
AD9
F
37 51Right-handed alpha
Helix 37
AE1
F
70 73Right-handed 310
Helix 38
AE2
F
77 113Right-handed alpha
Helix 39
AE3
F
117 141Right-handed alpha
Helix 40
AE4
F
154 165Right-handed alpha
Helix 41
AE5
F
206 215Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4Y66. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 62first strand
Strand 2
C
67 70anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 55first strand
Strand 2
D
67 68anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
26 27first strand
Strand 2
E
68 70anti-parallel
Strand 3
E
59 61anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
22 23first strand
Strand 2
F
63 68anti-parallel
Strand 3
F
54 59anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il