Analysis of interatomic Contacts of Structural Units in PDB entry:
4Y7D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Y7D entry

There are 2 chains in PDB entry 4Y7D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11GLY 299
B
 SER 11GLY 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4Y7D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 56Right-handed alpha
Helix 2
AA2
A
72 76Right-handed 310
Helix 3
AA3
A
78 93Right-handed alpha
Helix 4
AA4
A
106 117Right-handed alpha
Helix 5
AA5
A
140 149Right-handed alpha
Helix 6
AA6
A
149 163Right-handed alpha
Helix 7
AA7
A
163 175Right-handed alpha
Helix 8
AA8
A
179 192Right-handed alpha
Helix 9
AA9
A
193 207Right-handed alpha
Helix 10
AB1
A
210 212Right-handed 310
Helix 11
AB2
A
213 225Right-handed alpha
Helix 12
AB3
A
231 235Right-handed 310
Helix 13
AB4
A
251 262Right-handed alpha
Helix 14
AB5
A
276 281Right-handed alpha
Helix 15
AB6
A
284 297Right-handed alpha
Helix 16
AB7
B
42 56Right-handed alpha
Helix 17
AB8
B
72 76Right-handed 310
Helix 18
AB9
B
78 94Right-handed alpha
Helix 19
AC1
B
106 117Right-handed alpha
Helix 20
AC2
B
141 149Right-handed alpha
Helix 21
AC3
B
149 163Right-handed alpha
Helix 22
AC4
B
163 175Right-handed alpha
Helix 23
AC5
B
179 192Right-handed alpha
Helix 24
AC6
B
193 207Right-handed alpha
Helix 25
AC7
B
210 212Right-handed 310
Helix 26
AC8
B
213 225Right-handed alpha
Helix 27
AC9
B
231 235Right-handed 310
Helix 28
AD1
B
251 262Right-handed alpha
Helix 29
AD2
B
276 281Right-handed alpha
Helix 30
AD3
B
284 298Right-handed alpha
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There are 2 sheets in PDB entry 4Y7D. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
20 28anti-parallel
Strand 3
A
59 63anti-parallel
Strand 4
A
32 36parallel
Strand 5
A
98 103parallel
Strand 6
A
121 127parallel
Strand 7
A
239 244parallel
Strand 8
A
266 270parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 15first strand
Strand 2
B
22 28anti-parallel
Strand 3
B
59 63anti-parallel
Strand 4
B
32 36parallel
Strand 5
B
98 103parallel
Strand 6
B
121 127parallel
Strand 7
B
239 244parallel
Strand 8
B
266 270parallel
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