Analysis of interatomic Contacts of Structural Units in PDB entry:
4Y7E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Y7E entry

There are 2 chains in PDB entry 4Y7E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 51ALA 352
B
 THR 52GLY 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4Y7E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
77 81Right-handed 310
Helix 2
AA2
A
86 94Right-handed alpha
Helix 3
AA3
A
113 127Right-handed alpha
Helix 4
AA4
A
137 139Right-handed 310
Helix 5
AA5
A
149 160Right-handed alpha
Helix 6
AA6
A
160 165Right-handed alpha
Helix 7
AA7
A
184 187Right-handed 310
Helix 8
AA8
A
188 202Right-handed alpha
Helix 9
AA9
A
221 233Right-handed alpha
Helix 10
AB1
A
251 265Right-handed alpha
Helix 11
AB2
A
285 296Right-handed alpha
Helix 12
AB3
A
310 314Right-handed 310
Helix 13
AB4
A
325 334Right-handed alpha
Helix 14
AB5
A
337 342Right-handed alpha
Helix 15
AB6
A
345 349Right-handed 310
Helix 16
AB7
B
77 81Right-handed 310
Helix 17
AB8
B
86 94Right-handed alpha
Helix 18
AB9
B
113 127Right-handed alpha
Helix 19
AC1
B
137 139Right-handed 310
Helix 20
AC2
B
149 160Right-handed alpha
Helix 21
AC3
B
160 165Right-handed alpha
Helix 22
AC4
B
184 187Right-handed 310
Helix 23
AC5
B
188 203Right-handed alpha
Helix 24
AC6
B
221 233Right-handed alpha
Helix 25
AC7
B
251 265Right-handed alpha
Helix 26
AC8
B
285 296Right-handed alpha
Helix 27
AC9
B
310 314Right-handed 310
Helix 28
AD1
B
325 334Right-handed alpha
Helix 29
AD2
B
337 342Right-handed alpha
Helix 30
AD3
B
345 349Right-handed 310
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There are 6 sheets in PDB entry 4Y7E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
60 62anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
98 103parallel
Strand 3
A
130 135parallel
Strand 4
A
171 174parallel
Strand 5
A
208 211parallel
Strand 6
A
239 245parallel
Strand 7
A
269 274parallel
Strand 8
A
300 302parallel
Strand 9
A
72 76parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 317first strand
Strand 2
A
320 324anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 57first strand
Strand 2
B
60 62anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 76first strand
Strand 2
B
98 103parallel
Strand 3
B
130 135parallel
Strand 4
B
171 174parallel
Strand 5
B
208 211parallel
Strand 6
B
239 245parallel
Strand 7
B
269 274parallel
Strand 8
B
299 302parallel
Strand 9
B
72 76parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
316 317first strand
Strand 2
B
320 324anti-parallel
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