Analysis of interatomic Contacts of Structural Units in PDB entry:
4Y7P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Y7P entry

There is 1 chain in PDB entry 4Y7P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 17LYS 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4Y7P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 31Right-handed alpha
Helix 2
AA2
A
32 34Right-handed 310
Helix 3
AA3
A
75 90Right-handed alpha
Helix 4
AA4
A
98 102Right-handed 310
Helix 5
AA5
A
118 124Right-handed alpha
Helix 6
AA6
A
131 135Right-handed 310
Helix 7
AA7
A
148 158Right-handed alpha
Helix 8
AA8
A
172 188Right-handed alpha
Helix 9
AA9
A
190 199Right-handed alpha
Helix 10
AB1
A
242 250Right-handed 310
Helix 11
AB2
A
256 268Right-handed alpha
Helix 12
AB3
A
273 281Right-handed alpha
Helix 13
AB4
A
348 357Right-handed alpha
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There are 3 sheets in PDB entry 4Y7P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 54first strand
Strand 2
A
37 44anti-parallel
Strand 3
A
331 337anti-parallel
Strand 4
A
319 325anti-parallel
Strand 5
A
308 316anti-parallel
Strand 6
A
299 302anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
253 255anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
226 228anti-parallel
Strand 3
A
339 341parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il