Analysis of interatomic Contacts of Structural Units in PDB entry:
4Y83

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4Y83 entry

There are 3 chains in PDB entry 4Y83 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 73	ASN 389
B	LEU 73	PRO 390
C	SER 74	ASN 389

There are 41 helices in PDB entry 4Y83. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	80	90	Right-handed alpha
Helix 2	AA2	A	135	138	Right-handed 310
Helix 3	AA3	A	172	175	Right-handed 310
Helix 4	AA4	A	176	185	Right-handed alpha
Helix 5	AA5	A	214	223	Right-handed alpha
Helix 6	AA6	A	226	247	Right-handed alpha
Helix 7	AA7	A	255	257	Right-handed 310
Helix 8	AA8	A	290	294	Right-handed 310
Helix 9	AA9	A	295	301	Right-handed alpha
Helix 10	AB1	A	306	323	Right-handed alpha
Helix 11	AB2	A	340	346	Right-handed alpha
Helix 12	AB3	A	349	353	Right-handed 310
Helix 13	AB4	A	358	369	Right-handed alpha
Helix 14	AB5	A	378	384	Right-handed alpha
Helix 15	AB6	B	80	92	Right-handed alpha
Helix 16	AB7	B	135	138	Right-handed 310
Helix 17	AB8	B	172	175	Right-handed 310
Helix 18	AB9	B	176	185	Right-handed alpha
Helix 19	AC1	B	214	223	Right-handed alpha
Helix 20	AC2	B	226	247	Right-handed alpha
Helix 21	AC3	B	255	257	Right-handed 310
Helix 22	AC4	B	290	294	Right-handed 310
Helix 23	AC5	B	295	301	Right-handed alpha
Helix 24	AC6	B	306	323	Right-handed alpha
Helix 25	AC7	B	339	346	Right-handed alpha
Helix 26	AC8	B	349	353	Right-handed 310
Helix 27	AC9	B	358	369	Right-handed alpha
Helix 28	AD1	B	378	384	Right-handed alpha
Helix 29	AD2	C	80	90	Right-handed alpha
Helix 30	AD3	C	172	175	Right-handed 310
Helix 31	AD4	C	176	185	Right-handed alpha
Helix 32	AD5	C	215	222	Right-handed alpha
Helix 33	AD6	C	226	247	Right-handed alpha
Helix 34	AD7	C	290	294	Right-handed 310
Helix 35	AD8	C	295	301	Right-handed alpha
Helix 36	AD9	C	306	323	Right-handed alpha
Helix 37	AE1	C	325	331	Right-handed alpha
Helix 38	AE2	C	339	346	Right-handed alpha
Helix 39	AE3	C	349	353	Right-handed 310
Helix 40	AE4	C	358	369	Right-handed alpha
Helix 41	AE5	C	378	384	Right-handed alpha

There are 14 sheets in PDB entry 4Y83. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	105	109	parallel
Strand 3	A	193	199	anti-parallel
Strand 4	A	202	208	anti-parallel
Strand 5	A	163	170	anti-parallel
Strand 6	A	151	157	anti-parallel
Strand 7	A	127	130	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	105	109	parallel
Strand 3	A	193	199	anti-parallel
Strand 4	A	202	208	anti-parallel
Strand 5	A	163	170	anti-parallel
Strand 6	A	151	157	anti-parallel
Strand 7	A	143	145	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	133	first strand
Strand 2	A	140	141	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	250	first strand
Strand 2	A	275	276	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	266	268	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	105	109	parallel
Strand 3	B	193	199	anti-parallel
Strand 4	B	202	208	anti-parallel
Strand 5	B	163	170	anti-parallel
Strand 6	B	151	157	anti-parallel
Strand 7	B	127	130	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	105	109	parallel
Strand 3	B	193	199	anti-parallel
Strand 4	B	202	208	anti-parallel
Strand 5	B	163	170	anti-parallel
Strand 6	B	151	157	anti-parallel
Strand 7	B	143	145	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	133	first strand
Strand 2	B	140	141	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	250	first strand
Strand 2	B	275	276	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	261	first strand
Strand 2	B	266	268	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	105	109	parallel
Strand 3	C	193	199	anti-parallel
Strand 4	C	202	208	anti-parallel
Strand 5	C	163	170	anti-parallel
Strand 6	C	151	156	anti-parallel
Strand 7	C	143	144	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	134	first strand
Strand 2	C	139	141	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	214	first strand
Strand 2	C	259	261	anti-parallel
Strand 3	C	266	268	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	250	first strand
Strand 2	C	275	276	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4Y83

Analysis of interatomic Contacts of Structural Units in PDB entry:
4Y83