Analysis of interatomic Contacts of Structural Units in PDB entry:
4Y85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Y85 entry

There are 3 chains in PDB entry 4Y85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 73PRO 390
B
 LEU 73PRO 390
C
 LEU 73PRO 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 4Y85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 93Right-handed alpha
Helix 2
AA2
A
172 175Right-handed 310
Helix 3
AA3
A
176 185Right-handed alpha
Helix 4
AA4
A
214 223Right-handed alpha
Helix 5
AA5
A
226 247Right-handed alpha
Helix 6
AA6
A
255 257Right-handed 310
Helix 7
AA7
A
290 294Right-handed 310
Helix 8
AA8
A
295 301Right-handed alpha
Helix 9
AA9
A
306 323Right-handed alpha
Helix 10
AB1
A
339 347Right-handed alpha
Helix 11
AB2
A
349 353Right-handed 310
Helix 12
AB3
A
358 369Right-handed alpha
Helix 13
AB4
A
378 383Right-handed alpha
Helix 14
AB5
A
384 389Right-handed 310
Helix 15
AB6
B
80 93Right-handed alpha
Helix 16
AB7
B
172 175Right-handed 310
Helix 17
AB8
B
176 185Right-handed alpha
Helix 18
AB9
B
214 223Right-handed alpha
Helix 19
AC1
B
226 247Right-handed alpha
Helix 20
AC2
B
255 257Right-handed 310
Helix 21
AC3
B
290 294Right-handed 310
Helix 22
AC4
B
295 301Right-handed alpha
Helix 23
AC5
B
306 323Right-handed alpha
Helix 24
AC6
B
339 347Right-handed alpha
Helix 25
AC7
B
349 353Right-handed 310
Helix 26
AC8
B
358 369Right-handed alpha
Helix 27
AC9
B
372 376Right-handed 310
Helix 28
AD1
B
378 383Right-handed alpha
Helix 29
AD2
B
384 389Right-handed 310
Helix 30
AD3
C
80 92Right-handed alpha
Helix 31
AD4
C
172 175Right-handed 310
Helix 32
AD5
C
176 185Right-handed alpha
Helix 33
AD6
C
214 223Right-handed alpha
Helix 34
AD7
C
226 247Right-handed alpha
Helix 35
AD8
C
255 257Right-handed 310
Helix 36
AD9
C
290 294Right-handed 310
Helix 37
AE1
C
295 301Right-handed alpha
Helix 38
AE2
C
306 323Right-handed alpha
Helix 39
AE3
C
339 347Right-handed alpha
Helix 40
AE4
C
349 353Right-handed 310
Helix 41
AE5
C
358 369Right-handed alpha
Helix 42
AE6
C
378 383Right-handed alpha
Helix 43
AE7
C
384 389Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 4Y85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
106 109parallel
Strand 3
A
193 199anti-parallel
Strand 4
A
202 207anti-parallel
Strand 5
A
163 170anti-parallel
Strand 6
A
151 157anti-parallel
Strand 7
A
127 130anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
275 276anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
266 268anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 78first strand
Strand 2
B
106 109parallel
Strand 3
B
193 199anti-parallel
Strand 4
B
202 207anti-parallel
Strand 5
B
163 170anti-parallel
Strand 6
B
151 157anti-parallel
Strand 7
B
127 130anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 250first strand
Strand 2
B
275 276anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 261first strand
Strand 2
B
266 268anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 78first strand
Strand 2
C
106 109parallel
Strand 3
C
193 199anti-parallel
Strand 4
C
202 207anti-parallel
Strand 5
C
163 170anti-parallel
Strand 6
C
151 157anti-parallel
Strand 7
C
127 130anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
249 250first strand
Strand 2
C
275 276anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
259 261first strand
Strand 2
C
266 268anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il