Analysis of interatomic Contacts of Structural Units in PDB entry:
4Y87


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Y87 entry

There are 2 chains in PDB entry 4Y87 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 185LYS 506
B
 PRO 181LYS 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 4Y87. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
189 196Right-handed alpha
Helix 2
AA2
A
202 206Right-handed 310
Helix 3
AA3
A
207 222Right-handed alpha
Helix 4
AA4
A
223 228Right-handed alpha
Helix 5
AA5
A
231 245Right-handed alpha
Helix 6
AA6
A
253 272Right-handed alpha
Helix 7
AA7
A
272 277Right-handed alpha
Helix 8
AA8
A
278 292Right-handed alpha
Helix 9
AA9
A
300 307Right-handed alpha
Helix 10
AB1
A
309 315Right-handed alpha
Helix 11
AB2
A
319 335Right-handed alpha
Helix 12
AB3
A
336 339Right-handed 310
Helix 13
AB4
A
345 363Right-handed alpha
Helix 14
AB5
A
364 366Right-handed 310
Helix 15
AB6
A
367 380Right-handed alpha
Helix 16
AB7
A
386 404Right-handed alpha
Helix 17
AB8
A
409 433Right-handed alpha
Helix 18
AB9
A
448 460Right-handed alpha
Helix 19
AC1
A
460 472Right-handed alpha
Helix 20
AC2
A
474 479Right-handed alpha
Helix 21
AC3
A
479 502Right-handed alpha
Helix 22
AC4
B
189 196Right-handed alpha
Helix 23
AC5
B
202 206Right-handed 310
Helix 24
AC6
B
207 222Right-handed alpha
Helix 25
AC7
B
223 228Right-handed alpha
Helix 26
AC8
B
231 246Right-handed alpha
Helix 27
AC9
B
253 271Right-handed alpha
Helix 28
AD1
B
272 277Right-handed alpha
Helix 29
AD2
B
278 292Right-handed alpha
Helix 30
AD3
B
300 307Right-handed alpha
Helix 31
AD4
B
309 316Right-handed alpha
Helix 32
AD5
B
319 335Right-handed alpha
Helix 33
AD6
B
345 363Right-handed alpha
Helix 34
AD7
B
364 366Right-handed 310
Helix 35
AD8
B
367 380Right-handed alpha
Helix 36
AD9
B
386 403Right-handed alpha
Helix 37
AE1
B
404 408Right-handed 310
Helix 38
AE2
B
409 434Right-handed alpha
Helix 39
AE3
B
439 443Right-handed 310
Helix 40
AE4
B
448 460Right-handed alpha
Helix 41
AE5
B
460 472Right-handed alpha
Helix 42
AE6
B
474 479Right-handed alpha
Helix 43
AE7
B
479 504Right-handed alpha
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There are no sheets in PDB entry 4Y87
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