Analysis of interatomic Contacts of Structural Units in PDB entry:
4Y8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Y8F entry

There is 1 chain in PDB entry 4Y8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1TYR 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4Y8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 34Right-handed alpha
Helix 2
AA2
A
45 47Right-handed 310
Helix 3
AA3
A
48 56Right-handed alpha
Helix 4
AA4
A
81 88Right-handed alpha
Helix 5
AA5
A
97 104Right-handed alpha
Helix 6
AA6
A
107 121Right-handed alpha
Helix 7
AA7
A
132 138Right-handed alpha
Helix 8
AA8
A
140 153Right-handed alpha
Helix 9
AA9
A
157 162Right-handed alpha
Helix 10
AB1
A
170 174Right-handed 310
Helix 11
AB2
A
181 201Right-handed alpha
Helix 12
AB3
A
201 208Right-handed alpha
Helix 13
AB4
A
220 226Right-handed alpha
Helix 14
AB5
A
236 240Right-handed 310
Helix 15
AB6
A
241 250Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 4Y8F.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
39 43parallel
Strand 3
A
61 65parallel
Strand 4
A
92 95parallel
Strand 5
A
124 129parallel
Strand 6
A
165 168parallel
Strand 7
A
209 212parallel
Strand 8
A
232 235parallel
Strand 9
A
8 12parallel
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