Analysis of interatomic Contacts of Structural Units in PDB entry:
4Y96


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Y96 entry

There are 2 chains in PDB entry 4Y96 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6GLY 255
B
 THR 6GLY 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4Y96. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 35Right-handed alpha
Helix 2
AA2
A
47 49Right-handed 310
Helix 3
AA3
A
50 59Right-handed alpha
Helix 4
AA4
A
83 91Right-handed alpha
Helix 5
AA5
A
99 105Right-handed alpha
Helix 6
AA6
A
109 124Right-handed alpha
Helix 7
AA7
A
134 140Right-handed alpha
Helix 8
AA8
A
142 156Right-handed alpha
Helix 9
AA9
A
160 164Right-handed 310
Helix 10
AB1
A
172 176Right-handed 310
Helix 11
AB2
A
183 203Right-handed alpha
Helix 12
AB3
A
203 210Right-handed alpha
Helix 13
AB4
A
222 228Right-handed alpha
Helix 14
AB5
A
238 242Right-handed 310
Helix 15
AB6
A
243 254Right-handed alpha
Helix 16
AB7
B
20 35Right-handed alpha
Helix 17
AB8
B
47 49Right-handed 310
Helix 18
AB9
B
50 58Right-handed alpha
Helix 19
AC1
B
83 91Right-handed alpha
Helix 20
AC2
B
99 105Right-handed alpha
Helix 21
AC3
B
109 124Right-handed alpha
Helix 22
AC4
B
134 140Right-handed alpha
Helix 23
AC5
B
142 155Right-handed alpha
Helix 24
AC6
B
159 164Right-handed alpha
Helix 25
AC7
B
172 176Right-handed 310
Helix 26
AC8
B
183 203Right-handed alpha
Helix 27
AC9
B
203 210Right-handed alpha
Helix 28
AD1
B
222 228Right-handed alpha
Helix 29
AD2
B
238 242Right-handed 310
Helix 30
AD3
B
243 254Right-handed alpha
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There are 2 sheets in PDB entry 4Y96. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
41 45parallel
Strand 3
A
64 67parallel
Strand 4
A
92 97parallel
Strand 5
A
126 131parallel
Strand 6
A
166 170parallel
Strand 7
A
212 215parallel
Strand 8
A
234 237parallel
Strand 9
A
10 14parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
41 45parallel
Strand 3
B
64 67parallel
Strand 4
B
92 97parallel
Strand 5
B
126 131parallel
Strand 6
B
166 170parallel
Strand 7
B
212 215parallel
Strand 8
B
234 237parallel
Strand 9
B
10 14parallel
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