Analysis of interatomic Contacts of Structural Units in PDB entry:
4Y9J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Y9J entry

There are 2 chains in PDB entry 4Y9J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 19THR 610
B
 THR 19ALA 611
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 4Y9J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 27Right-handed 310
Helix 2
AA2
A
51 60Right-handed alpha
Helix 3
AA3
A
61 82Right-handed alpha
Helix 4
AA4
A
82 93Right-handed alpha
Helix 5
AA5
A
113 126Right-handed alpha
Helix 6
AA6
A
129 133Right-handed 310
Helix 7
AA7
A
138 154Right-handed alpha
Helix 8
AA8
A
155 157Right-handed 310
Helix 9
AA9
A
160 177Right-handed alpha
Helix 10
AB1
A
183 194Right-handed alpha
Helix 11
AB2
A
216 221Right-handed alpha
Helix 12
AB3
A
266 268Right-handed 310
Helix 13
AB4
A
321 328Right-handed alpha
Helix 14
AB5
A
329 357Right-handed alpha
Helix 15
AB6
A
369 403Right-handed alpha
Helix 16
AB7
A
406 438Right-handed alpha
Helix 17
AB8
A
439 448Right-handed 310
Helix 18
AB9
A
449 458Right-handed alpha
Helix 19
AC1
A
466 479Right-handed alpha
Helix 20
AC2
A
482 497Right-handed alpha
Helix 21
AC3
A
503 529Right-handed alpha
Helix 22
AC4
A
530 536Right-handed 310
Helix 23
AC5
A
537 540Right-handed 310
Helix 24
AC6
A
541 563Right-handed alpha
Helix 25
AC7
A
569 582Right-handed alpha
Helix 26
AC8
A
589 593Right-handed 310
Helix 27
AC9
A
594 606Right-handed alpha
Helix 28
AD1
B
23 27Right-handed 310
Helix 29
AD2
B
51 60Right-handed alpha
Helix 30
AD3
B
61 82Right-handed alpha
Helix 31
AD4
B
82 93Right-handed alpha
Helix 32
AD5
B
113 126Right-handed alpha
Helix 33
AD6
B
129 134Right-handed 310
Helix 34
AD7
B
138 154Right-handed alpha
Helix 35
AD8
B
155 157Right-handed 310
Helix 36
AD9
B
160 177Right-handed alpha
Helix 37
AE1
B
183 194Right-handed alpha
Helix 38
AE2
B
216 221Right-handed alpha
Helix 39
AE3
B
266 268Right-handed 310
Helix 40
AE4
B
321 357Right-handed alpha
Helix 41
AE5
B
369 402Right-handed alpha
Helix 42
AE6
B
406 438Right-handed alpha
Helix 43
AE7
B
439 448Right-handed 310
Helix 44
AE8
B
449 458Right-handed alpha
Helix 45
AE9
B
466 480Right-handed alpha
Helix 46
AF1
B
483 497Right-handed alpha
Helix 47
AF2
B
503 531Right-handed alpha
Helix 48
AF3
B
532 534Right-handed 310
Helix 49
AF4
B
537 540Right-handed 310
Helix 50
AF5
B
541 564Right-handed alpha
Helix 51
AF6
B
569 582Right-handed alpha
Helix 52
AF7
B
589 593Right-handed 310
Helix 53
AF8
B
594 606Right-handed alpha
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There are 8 sheets in PDB entry 4Y9J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 100first strand
Strand 2
A
106 111anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
249 256parallel
Strand 3
A
224 229parallel
Strand 4
A
232 243anti-parallel
Strand 5
A
303 316anti-parallel
Strand 6
A
287 292anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
249 256parallel
Strand 3
A
270 276anti-parallel
Strand 4
A
303 316anti-parallel
Strand 5
A
287 292anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
364 365anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 100first strand
Strand 2
B
106 111anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 207first strand
Strand 2
B
249 256parallel
Strand 3
B
224 229parallel
Strand 4
B
232 243anti-parallel
Strand 5
B
303 316anti-parallel
Strand 6
B
287 292anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 207first strand
Strand 2
B
249 256parallel
Strand 3
B
270 276anti-parallel
Strand 4
B
303 316anti-parallel
Strand 5
B
287 292anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 361first strand
Strand 2
B
364 365anti-parallel
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