Analysis of interatomic Contacts of Structural Units in PDB entry:
4YAJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4YAJ entry

There are 4 chains in PDB entry 4YAJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	VAL 463
B	SER 2	ARG 230
C	ASP 3	VAL 463
D	SER 2	ARG 230

There are 54 helices in PDB entry 4YAJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	9	Right-handed alpha
Helix 2	AA2	A	24	36	Right-handed alpha
Helix 3	AA3	A	60	64	Right-handed 310
Helix 4	AA4	A	76	91	Right-handed alpha
Helix 5	AA5	A	102	106	Right-handed 310
Helix 6	AA6	A	107	120	Right-handed alpha
Helix 7	AA7	A	137	139	Right-handed 310
Helix 8	AA8	A	161	174	Right-handed alpha
Helix 9	AA9	A	191	202	Right-handed alpha
Helix 10	AB1	A	219	232	Right-handed alpha
Helix 11	AB2	A	244	252	Right-handed alpha
Helix 12	AB3	A	261	272	Right-handed alpha
Helix 13	AB4	A	279	293	Right-handed alpha
Helix 14	AB5	A	307	321	Right-handed alpha
Helix 15	AB6	A	329	338	Right-handed alpha
Helix 16	AB7	A	357	371	Right-handed alpha
Helix 17	AB8	A	388	404	Right-handed alpha
Helix 18	AB9	A	416	429	Right-handed alpha
Helix 19	AC1	A	436	461	Right-handed alpha
Helix 20	AC2	B	3	13	Right-handed alpha
Helix 21	AC3	B	19	29	Right-handed alpha
Helix 22	AC4	B	42	54	Right-handed alpha
Helix 23	AC5	B	81	98	Right-handed alpha
Helix 24	AC6	B	140	145	Right-handed alpha
Helix 25	AC7	B	157	168	Right-handed alpha
Helix 26	AC8	B	170	175	Right-handed 310
Helix 27	AC9	B	184	202	Right-handed alpha
Helix 28	AD1	C	4	9	Right-handed alpha
Helix 29	AD2	C	24	37	Right-handed alpha
Helix 30	AD3	C	60	64	Right-handed 310
Helix 31	AD4	C	76	91	Right-handed alpha
Helix 32	AD5	C	102	106	Right-handed 310
Helix 33	AD6	C	107	120	Right-handed alpha
Helix 34	AD7	C	137	139	Right-handed 310
Helix 35	AD8	C	161	174	Right-handed alpha
Helix 36	AD9	C	191	202	Right-handed alpha
Helix 37	AE1	C	219	232	Right-handed alpha
Helix 38	AE2	C	244	251	Right-handed alpha
Helix 39	AE3	C	261	273	Right-handed alpha
Helix 40	AE4	C	279	293	Right-handed alpha
Helix 41	AE5	C	307	321	Right-handed alpha
Helix 42	AE6	C	329	338	Right-handed alpha
Helix 43	AE7	C	357	371	Right-handed alpha
Helix 44	AE8	C	388	404	Right-handed alpha
Helix 45	AE9	C	416	429	Right-handed alpha
Helix 46	AF1	C	436	461	Right-handed alpha
Helix 47	AF2	D	3	13	Right-handed alpha
Helix 48	AF3	D	19	30	Right-handed alpha
Helix 49	AF4	D	42	54	Right-handed alpha
Helix 50	AF5	D	81	95	Right-handed alpha
Helix 51	AF6	D	140	145	Right-handed alpha
Helix 52	AF7	D	157	168	Right-handed alpha
Helix 53	AF8	D	170	175	Right-handed 310
Helix 54	AF9	D	184	202	Right-handed alpha

There are 14 sheets in PDB entry 4YAJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	45	first strand
Strand 2	A	12	16	parallel
Strand 3	A	70	73	parallel
Strand 4	A	94	97	parallel
Strand 5	A	124	126	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	52	first strand
Strand 2	A	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	143	first strand
Strand 2	A	132	135	anti-parallel
Strand 3	A	178	183	anti-parallel
Strand 4	A	151	158	parallel
Strand 5	A	207	212	parallel
Strand 6	A	236	240	parallel
Strand 7	A	275	277	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	351	first strand
Strand 2	A	301	305	parallel
Strand 3	A	376	382	parallel
Strand 4	A	409	414	parallel
Strand 5	A	433	434	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	107	112	anti-parallel
Strand 3	B	57	62	anti-parallel
Strand 4	B	75	79	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	153	first strand
Strand 2	B	131	138	anti-parallel
Strand 3	B	118	127	anti-parallel
Strand 4	B	205	215	anti-parallel
Strand 5	B	220	222	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	153	first strand
Strand 2	B	131	138	anti-parallel
Strand 3	B	118	127	anti-parallel
Strand 4	B	205	215	anti-parallel
Strand 5	B	225	229	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	45	first strand
Strand 2	C	12	16	parallel
Strand 3	C	70	73	parallel
Strand 4	C	94	97	parallel
Strand 5	C	124	126	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	143	first strand
Strand 2	C	132	135	anti-parallel
Strand 3	C	178	183	anti-parallel
Strand 4	C	151	158	parallel
Strand 5	C	207	212	parallel
Strand 6	C	236	240	parallel
Strand 7	C	275	277	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	351	first strand
Strand 2	C	301	305	parallel
Strand 3	C	376	382	parallel
Strand 4	C	409	414	parallel
Strand 5	C	433	434	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	40	first strand
Strand 2	D	107	112	anti-parallel
Strand 3	D	57	62	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	153	first strand
Strand 2	D	131	138	anti-parallel
Strand 3	D	118	127	anti-parallel
Strand 4	D	205	215	anti-parallel
Strand 5	D	220	222	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	153	first strand
Strand 2	D	131	138	anti-parallel
Strand 3	D	118	127	anti-parallel
Strand 4	D	205	215	anti-parallel
Strand 5	D	225	229	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4YAJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4YAJ